Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 1.8e-257 892.1 451 100.0
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.3e-146 523.9 429 60.1
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 3.8e-143 512.3 433 59.1
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 1.4e-137 493.8 431 56.6
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.8e-137 493.4 429 56.6
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 3.1e-137 492.7 427 55.7
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 5.3e-137 491.9 432 55.8
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 5.3e-137 491.9 434 56.2
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 6.9e-137 491.5 429 56.6
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 4.5e-136 488.8 429 56.4
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 4.5e-136 488.8 431 56.4
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 2.2e-135 486.5 429 54.5
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.8e-135 485.7 429 56.2
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.8e-135 485.7 434 56.7
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 3.8e-135 485.7 430 56.3
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 3.8e-135 485.7 429 55.9
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.4e-134 483.8 433 55.7
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 1.4e-134 483.8 433 55.7
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 4.2e-134 482.3 432 56.7
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 2.1e-133 479.9 423 57.0
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 2.1e-133 479.9 431 55.2
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 2.1e-133 479.9 438 54.8
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.7e-133 479.6 429 55.9
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 4.6e-133 478.8 440 55.0
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 6.0e-133 478.4 430 56.5
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 7.9e-133 478.0 433 54.0
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 3.0e-132 476.1 429 55.9
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 1.5e-131 473.8 433 55.0
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.9e-131 473.4 384 59.9
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 2.5e-131 473.0 433 54.3
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.3e-130 470.7 429 55.7
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 2.8e-130 469.5 426 55.2
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 3.7e-130 469.2 425 56.0
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 4.8e-130 468.8 414 57.2
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.1e-129 467.6 433 54.5
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.4e-129 467.2 442 52.9
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 2.4e-129 466.5 459 52.1
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.1e-129 465.7 442 52.9
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 9.0e-129 464.5 425 53.6
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.5e-128 463.8 429 52.7
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.5e-128 463.8 429 54.8
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.0e-127 461.1 433 53.6
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.0e-127 461.1 436 53.7
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.3e-127 460.7 426 53.5
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 3.8e-127 459.1 387 57.6
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 6.5e-127 458.4 388 58.0
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 6.5e-127 458.4 430 54.4
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.1e-126 457.6 458 51.1
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.4e-126 457.2 430 54.2
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.9e-126 456.8 430 53.3
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.9e-126 456.8 459 51.0
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 5.5e-126 455.3 433 52.4
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 7.2e-126 454.9 433 53.3
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 9.4e-126 454.5 429 54.3
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 2.7e-125 453.0 507 48.7
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 2.7e-125 453.0 430 53.3
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 4.6e-125 452.2 431 53.4
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 4.6e-125 452.2 431 53.4
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 3.0e-124 449.5 431 53.4
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 3.0e-124 449.5 431 53.4
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 3.0e-124 449.5 430 52.3
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 5.1e-124 448.7 452 51.5
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 5.1e-124 448.7 430 52.6
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.8e-124 448.0 459 50.8
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.1e-123 447.6 434 53.7
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 3.3e-123 446.0 482 49.0
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.8e-121 440.3 382 56.0
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 3.1e-121 439.5 545 44.0
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.9e-121 438.3 433 51.3
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 5.9e-120 435.3 436 51.1
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.0e-119 434.5 433 51.5
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.7e-119 433.7 382 56.5
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 1.1e-118 431.0 456 49.3
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 4.2e-118 429.1 363 57.6
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 1.1e-115 421.0 445 49.7
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 7.4e-115 418.3 363 56.7
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 2.0e-112 410.2 434 50.2
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 5.9e-112 408.7 458 48.0
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 2.5e-110 403.3 416 51.9
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 2.6e-107 393.3 557 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.2e-104 384.4 431 46.2
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 8.5e-103 378.3 424 48.1
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 3.6e-101 372.9 325 58.2
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 3.0e-100 369.8 405 48.1
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 8.8e-100 368.2 401 47.4
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 3.3e-99 366.3 423 46.3
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 2.2e-98 363.6 449 47.0
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 6.3e-98 362.1 294 59.2
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 1.8e-97 360.5 311 56.3
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 7.0e-97 358.6 393 48.6
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 3.2e-94 349.7 324 54.3
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 2.6e-91 340.1 424 43.6
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.8e-89 334.0 313 53.7
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 1.0e-87 328.2 196 81.6
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 9.5e-86 321.6 292 57.9
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.1e-85 320.5 290 54.5
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 2.8e-82 310.1 256 59.0
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 8.3e-82 308.5 364 46.2
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 6.1e-77 292.4 277 52.7
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 4.6e-56 223.0 276 43.5
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.1e-52 211.8 333 39.0
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.4e-49 201.4 338 36.1
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 1.1e-46 191.8 96 94.8
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.1e-41 175.3 169 52.1
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 3.9e-39 166.8 154 51.9
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 5.6e-38 162.9 145 59.3
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 7.3e-38 162.5 140 57.1
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 9.0e-36 155.6 214 43.5
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 5.8e-35 152.9 120 61.7
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 6.4e-34 149.4 158 49.4
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.4e-33 148.3 109 61.5
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 3.1e-28 130.6 131 50.4
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 1.4e-25 121.7 66 92.4
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 2.5e-22 110.9 96 56.2
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 3.3e-22 110.5 55 94.5
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 6.2e-21 106.3 97 57.7
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 1.4e-20 105.1 94 55.3
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.7e-18 98.2 372 26.6
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 1.2e-11 75.5 177 27.7


User provided reference genes

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