Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 1.9e-144 515.8 257 100.0
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 1.0e-137 493.4 257 94.9
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 1.7e-124 449.5 257 86.4
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 1.1e-91 340.5 251 64.9
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 2.5e-91 339.3 245 65.7
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 1.6e-90 336.7 253 64.0
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 5.2e-89 331.6 249 65.5
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 8.9e-89 330.9 239 66.9
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 1.5e-88 330.1 247 64.8
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 3.4e-88 328.9 255 63.9
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 4.4e-88 328.6 249 62.7
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 4.4e-88 328.6 257 63.0
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 1.3e-87 327.0 250 62.8
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 2.9e-87 325.9 257 62.3
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 6.4e-87 324.7 257 62.3
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 6.4e-87 324.7 250 62.0
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 2.4e-86 322.8 254 60.6
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 4.1e-86 322.0 257 61.5
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 4.1e-86 322.0 241 63.9
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 5.4e-86 321.6 252 61.9
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 9.2e-86 320.9 240 64.2
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 1.2e-85 320.5 253 62.5
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 1.6e-85 320.1 244 60.7
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 2.0e-85 319.7 252 60.7
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 2.0e-85 319.7 252 60.7
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 2.7e-85 319.3 251 60.2
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 3.5e-85 318.9 258 59.3
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 4.6e-85 318.5 242 63.2
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 3.0e-84 315.8 253 59.3
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 3.9e-84 315.5 243 62.6
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 3.9e-84 315.5 271 59.0
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 5.0e-84 315.1 253 57.7
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 6.6e-84 314.7 244 61.9
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 7.3e-83 311.2 246 58.5
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 9.5e-83 310.8 250 59.2
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 9.5e-83 310.8 239 61.9
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 9.5e-83 310.8 241 60.2
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 9.5e-83 310.8 241 61.4
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 1.2e-82 310.5 239 61.9
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 1.6e-82 310.1 243 60.9
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 2.8e-82 309.3 236 64.4
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 3.6e-82 308.9 242 59.5
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 4.7e-82 308.5 241 58.5
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 4.7e-82 308.5 257 58.4
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 6.2e-82 308.1 245 63.7
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 8.1e-82 307.8 240 61.2
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 1.4e-81 307.0 239 59.4
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 1.4e-81 307.0 237 60.3
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.3e-81 306.2 241 58.9
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 5.2e-81 305.1 240 60.8
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 6.8e-81 304.7 255 58.0
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 8.9e-81 304.3 253 56.9
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.2e-80 303.9 253 59.3
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 2.6e-80 302.8 236 64.0
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.6e-80 302.8 253 58.5
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 2.6e-80 302.8 251 57.0
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 3.4e-80 302.4 255 57.3
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 4.4e-80 302.0 252 56.3
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 4.4e-80 302.0 253 58.9
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 5.8e-80 301.6 253 58.9
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 5.8e-80 301.6 242 58.3
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 7.5e-80 301.2 243 60.1
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 9.8e-80 300.8 250 57.6
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 1.7e-79 300.1 240 59.2
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 2.2e-79 299.7 236 61.4
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.9e-79 299.3 253 58.9
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 3.7e-79 298.9 299 50.8
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 3.7e-79 298.9 240 59.6
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 8.3e-79 297.7 242 57.9
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 1.4e-78 297.0 252 57.5
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 1.4e-78 297.0 247 56.7
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.4e-78 297.0 253 58.1
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 1.9e-78 296.6 239 58.6
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.9e-78 296.6 230 59.1
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 9.2e-78 294.3 238 59.7
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 1.2e-77 293.9 245 59.2
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 1.6e-77 293.5 227 58.6
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 7.8e-77 291.2 229 58.1
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 1.3e-76 290.4 236 59.3
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 5.6e-75 285.0 284 51.8
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 1.2e-74 283.9 251 55.8
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 4.7e-74 282.0 248 57.3
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 2.0e-72 276.6 233 55.4
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 6.4e-71 271.6 257 53.7
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 2.4e-70 269.6 237 52.3
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 6.6e-68 261.5 237 50.6
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 8.6e-68 261.2 188 61.2
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 1.6e-66 256.9 253 53.8
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 1.9e-62 243.4 188 61.2
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 2.3e-60 236.5 259 44.4
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 3.0e-60 236.1 236 53.4
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 5.1e-60 235.3 182 61.5
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 9.0e-57 224.6 228 48.2
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 2.6e-56 223.0 182 55.5
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 5.8e-56 221.9 181 56.4
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 7.6e-56 221.5 182 56.0
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 7.6e-56 221.5 219 46.6
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 6.4e-55 218.4 180 57.2
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 1.9e-54 216.9 183 54.1
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 4.2e-54 215.7 179 57.0
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 1.6e-53 213.8 230 43.0
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 3.0e-52 209.5 206 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 3.9e-52 209.1 187 50.8
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 9.0e-49 198.0 147 59.2
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 9.0e-49 198.0 178 48.9
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 5.8e-48 195.3 187 49.7
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.4e-41 174.1 178 47.8
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 2.0e-40 170.2 182 49.5
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 7.6e-40 168.3 109 67.0
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 2.0e-32 143.7 203 35.5
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 3.9e-28 129.4 247 37.2
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 1.8e-25 120.6 237 30.4
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 2.0e-19 100.5 105 47.6


User provided reference genes

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