Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 0.0e+00 1640.6 968 100.0
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 0.0e+00 1354.0 974 82.9
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 7.5e-298 1027.3 975 68.5
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.3e-137 495.0 880 42.6
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.5e-133 481.5 891 43.0
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.8e-126 458.0 883 40.8
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 9.0e-126 455.7 878 44.4
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 3.4e-125 453.8 895 39.8
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 2.9e-124 450.7 888 38.7
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 1.1e-123 448.7 923 39.0
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 3.2e-123 447.2 878 40.1
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.1e-122 444.5 902 39.5
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.7e-122 444.1 902 43.8
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 3.5e-122 443.7 892 36.2
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.0e-121 442.2 928 43.1
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 6.7e-121 439.5 928 43.3
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.5e-120 438.3 894 40.4
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.5e-120 438.3 877 37.2
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.5e-120 437.6 942 42.3
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 7.4e-120 436.0 883 40.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 8.2e-119 432.6 894 37.7
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 3.1e-118 430.6 883 44.6
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 4.1e-118 430.3 904 39.7
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 4.1e-118 430.3 910 40.1
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.2e-117 428.7 900 39.1
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 2.6e-117 427.6 904 42.3
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 3.4e-117 427.2 901 35.2
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 3.4e-117 427.2 910 40.2
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.5e-117 426.8 928 41.7
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.3e-116 425.2 937 42.5
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 3.8e-116 423.7 909 37.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 3.8e-116 423.7 891 42.5
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 5.0e-116 423.3 906 39.0
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.9e-115 421.4 900 39.7
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.5e-115 421.0 874 40.8
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 3.2e-115 420.6 902 41.1
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.2e-115 420.6 924 42.4
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 4.2e-115 420.2 882 37.6
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 7.2e-115 419.5 951 39.7
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.1e-114 417.9 917 38.6
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 3.6e-114 417.2 875 39.3
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 3.6e-114 417.2 900 35.1
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 3.6e-114 417.2 888 36.8
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 4.6e-114 416.8 910 37.0
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 7.9e-114 416.0 945 41.5
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.0e-113 415.6 905 38.8
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 3.0e-113 414.1 897 39.1
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 6.7e-113 412.9 886 39.1
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 6.7e-113 412.9 890 38.3
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 1.1e-112 412.1 901 41.0
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 4.3e-112 410.2 905 38.6
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.3e-111 408.7 895 36.8
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.3e-111 408.7 887 39.6
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 6.3e-111 406.4 870 37.6
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.4e-110 405.2 900 38.7
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.4e-110 405.2 889 40.3
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.1e-110 404.1 891 42.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 5.3e-110 403.3 898 39.2
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 6.9e-110 402.9 887 38.3
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 9.1e-110 402.5 882 35.3
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 9.1e-110 402.5 881 38.0
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.2e-109 402.1 894 36.8
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 2.0e-109 401.4 905 36.9
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 2.6e-109 401.0 897 35.7
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 2.6e-109 401.0 883 39.2
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 3.4e-109 400.6 892 37.4
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 5.9e-109 399.8 947 38.6
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 7.7e-109 399.4 904 42.1
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.3e-108 398.7 883 39.1
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.7e-108 398.3 884 41.9
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.2e-108 397.9 873 39.4
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.0e-108 396.7 919 40.0
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.4e-107 395.2 919 39.9
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 2.1e-106 391.3 879 38.7
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.4e-105 388.7 896 41.1
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 1.8e-105 388.3 866 37.0
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 3.9e-105 387.1 890 42.1
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 7.4e-104 382.9 893 37.2
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 9.7e-104 382.5 890 40.2
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 2.2e-103 381.3 901 37.2
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.7e-103 380.6 905 36.4
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.3e-103 379.8 893 37.2
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 8.2e-103 379.4 890 40.1
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 6.9e-102 376.3 934 36.4
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 9.1e-102 375.9 920 40.5
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.3e-100 372.1 904 37.3
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 8.5e-100 369.4 944 41.0
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 2.5e-99 367.9 907 35.5
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 3.2e-99 367.5 854 37.1
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 5.5e-99 366.7 881 41.7
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 9.4e-99 365.9 910 33.4
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 9.4e-99 365.9 837 42.3
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.2e-98 365.5 910 33.4
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 1.2e-98 365.5 909 35.4
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 7.9e-98 362.8 861 35.4
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 1.4e-97 362.1 901 36.3
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 5.7e-96 356.7 885 37.4
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.1e-94 350.5 921 35.9
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 8.0e-90 336.3 886 35.3
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.2e-88 332.4 880 33.9
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 8.2e-87 326.2 764 37.3
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.4e-86 325.5 777 42.1
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.3e-86 323.6 867 33.6
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.5e-85 320.5 857 36.1
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 5.5e-83 313.5 512 43.9
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 8.0e-82 309.7 767 36.5
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 9.8e-80 302.8 987 34.7
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 9.1e-78 296.2 502 41.6
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.6e-74 285.4 793 42.5
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 5.2e-73 280.4 500 38.4
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 6.1e-66 256.9 240 62.5
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.1e-62 244.2 652 37.4
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.1e-51 209.5 146 78.8
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.5e-51 209.1 226 50.9
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.5e-48 199.1 502 33.5
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 4.9e-47 194.1 106 88.7
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 6.4e-47 193.7 499 33.5
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 4.7e-42 177.6 900 27.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 8.9e-41 173.3 785 31.1
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 1.1e-38 166.4 466 29.6
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.3e-36 159.5 383 33.9
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 4.7e-34 151.0 302 36.1
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 2.7e-29 135.2 660 25.3
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 8.7e-28 130.2 165 41.8
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 9.0e-25 120.2 109 54.1
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.6e-24 118.6 209 43.5
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 2.4e-22 112.1 227 34.8
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 5.1e-20 104.4 179 39.1
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.1e-17 96.7 171 42.1
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 8.2e-10 70.5 128 41.4
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 4.2e-06 58.2 47 53.2


User provided reference genes

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