Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 1.5e-219 766.5 598 100.0
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 3.7e-61 240.4 483 51.1
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 9.1e-60 235.7 577 46.8
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.2e-59 235.3 510 49.0
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 4.2e-57 226.9 532 48.1
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 7.9e-56 222.6 490 42.7
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 3.0e-55 220.7 485 49.3
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 2.0e-54 218.0 540 45.2
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 3.3e-54 217.2 494 44.7
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 3.3e-54 217.2 546 46.5
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 7.4e-54 216.1 488 49.8
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 3.7e-53 213.8 543 46.2
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 4.8e-53 213.4 512 44.9
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 8.2e-53 212.6 487 48.5
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 8.2e-53 212.6 485 48.5
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.4e-52 211.8 482 47.9
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 2.4e-52 211.1 550 46.7
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 2.4e-52 211.1 484 44.8
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 4.1e-52 210.3 581 42.9
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 6.9e-52 209.5 506 46.2
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 9.1e-52 209.1 573 42.6
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 2.0e-51 208.0 501 47.1
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 3.4e-51 207.2 493 46.9
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.5e-51 206.8 485 48.0
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 4.5e-51 206.8 557 43.8
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 4.5e-51 206.8 567 45.5
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.3e-50 205.3 506 45.3
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 2.2e-50 204.5 494 46.6
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 2.2e-50 204.5 493 43.6
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 2.2e-50 204.5 536 47.0
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.8e-50 203.8 487 48.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 6.5e-50 203.0 552 46.9
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 8.5e-50 202.6 487 47.2
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 1.4e-49 201.8 493 46.9
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 1.4e-49 201.8 521 43.8
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 1.9e-49 201.4 487 48.7
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 2.5e-49 201.1 493 47.3
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.5e-49 201.1 488 47.7
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 5.5e-49 199.9 555 43.8
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 7.2e-49 199.5 491 47.5
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.2e-48 198.7 482 47.9
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 1.6e-48 198.4 557 44.9
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 2.1e-48 198.0 362 36.5
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.7e-48 197.6 473 48.4
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.7e-48 197.6 473 48.4
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 2.7e-48 197.6 494 48.8
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 2.7e-48 197.6 492 48.2
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 3.6e-48 197.2 565 42.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 4.7e-48 196.8 572 41.3
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 6.1e-48 196.4 275 39.6
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.3e-47 194.5 481 50.1
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 3.9e-47 193.7 527 43.3
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.1e-46 192.2 562 44.1
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 4.4e-46 190.3 571 44.7
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 4.4e-46 190.3 482 46.9
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 9.7e-46 189.1 498 46.6
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 1.3e-45 188.7 496 46.8
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 1.7e-45 188.3 487 45.4
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 1.7e-45 188.3 573 45.4
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.7e-45 188.3 583 42.9
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 2.8e-45 187.6 568 43.0
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 3.7e-45 187.2 461 49.7
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 6.3e-45 186.4 434 30.2
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.1e-44 185.7 554 46.0
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 1.1e-44 185.7 440 51.1
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.1e-44 185.7 434 30.2
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.8e-44 184.9 561 43.5
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 4.1e-44 183.7 495 46.5
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 7.0e-44 183.0 578 45.3
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 9.1e-44 182.6 502 27.9
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 1.6e-43 181.8 438 50.7
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 3.5e-43 180.6 558 45.0
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 1.7e-42 178.3 567 42.2
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 6.5e-42 176.4 537 45.1
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 4.2e-41 173.7 517 42.6
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 7.2e-41 172.9 376 55.1
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 1.2e-40 172.2 563 44.4
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.6e-40 171.8 588 41.5
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 1.6e-40 171.8 477 47.8
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 2.1e-40 171.4 278 36.0
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 6.1e-40 169.9 594 41.8
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 8.0e-40 169.5 363 33.3
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 1.0e-39 169.1 354 33.9
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 4.0e-39 167.2 326 34.4
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 8.8e-39 166.0 355 33.8
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.2e-38 165.6 259 37.5
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.2e-38 165.6 556 43.9
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 1.5e-38 165.2 363 33.1
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 7.5e-38 162.9 417 29.0
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 7.5e-38 162.9 556 43.5
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 7.5e-38 162.9 582 38.3
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.2e-37 161.4 504 46.8
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 4.8e-37 160.2 556 43.3
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 8.2e-37 159.5 348 32.2
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 8.2e-37 159.5 359 34.0
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 8.2e-37 159.5 320 34.7
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 3.1e-36 157.5 341 33.4
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 3.1e-36 157.5 356 33.1
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 7.0e-36 156.4 273 35.5
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 7.0e-36 156.4 273 35.5
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 9.1e-36 156.0 362 32.6
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 5.9e-35 153.3 349 31.8
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 1.9e-33 148.3 358 32.1
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 2.7e-32 144.4 282 33.3
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 3.6e-32 144.1 482 45.9
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.2e-29 134.8 394 27.7
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.0e-23 115.9 230 30.9
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 6.8e-23 113.2 192 30.2
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 2.3e-18 98.2 411 38.4
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 6.6e-18 96.7 283 27.9
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.9e-17 95.1 405 24.2
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 9.5e-17 92.8 63 76.2
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.0e-14 85.1 293 27.0
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 2.0e-14 85.1 292 28.1
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.7e-13 80.9 57 68.4
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.7e-13 80.9 57 68.4
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 4.1e-12 77.4 57 64.9
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 3.5e-11 74.3 249 25.7
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 2.1e-08 65.1 138 29.7
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 3.6e-08 64.3 153 32.7
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 1.1e-07 62.8 58 58.6
Sabra11G0040100 Salix brachista HOM05D002986 ORTHO05D007611 3.1e-07 61.2 187 24.1
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 5.2e-07 60.5 111 26.1
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 6.8e-07 60.1 131 31.3
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 6.8e-07 60.1 131 31.3
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 1.2e-06 59.3 187 23.0
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 1.5e-06 58.9 151 25.8
C07p29280 Brassica napus HOM05D002986 ORTHO05D007611 3.4e-06 57.8 157 21.7
Lalb_Chr18g0059371 Lupinus albus HOM05D002986 ORTHO05D007611 3.4e-06 57.8 155 25.8
CiPaw.10G052700 Carya illinoinensis HOM05D002986 ORTHO05D007611 4.4e-06 57.4 201 25.4
Dinv17357 Davidia involucrata HOM05D002986 ORTHO05D007611 4.4e-06 57.4 155 23.9
TAR624G1385 Trochodendron aralioides HOM05D002986 ORTHO05D007611 5.8e-06 57.0 148 25.7
Sp2g10960 Schrenkiella parvula HOM05D002986 ORTHO05D007611 7.5e-06 56.6 155 22.6
A06p46180 Brassica napus HOM05D002986 ORTHO05D007611 9.8e-06 56.2 155 21.9
Glyma.13G235200 Glycine max HOM05D002986 ORTHO05D007611 9.8e-06 56.2 107 30.8
Potri.011G057900 Populus trichocarpa HOM05D002986 ORTHO05D007611 9.8e-06 56.2 187 22.5
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 9.8e-06 56.2 141 29.8


User provided reference genes

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