Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb144490 Zea mays HOM05D001089 ORTHO05D000920 1.3e-97 359.8 182 100.0
Zm00001eb117900 Zea mays HOM05D001089 ORTHO05D000920 2.9e-78 295.4 160 94.4
Os07g0123500 Oryza sativa ssp. japonica HOM05D001089 ORTHO05D000920 5.9e-55 218.0 160 73.1
Os03g0769400 Oryza sativa ssp. japonica HOM05D001089 ORTHO05D000920 3.2e-48 195.7 160 66.2
Zm00001eb058760 Zea mays HOM05D001089 ORTHO05D000920 5.2e-43 178.3 164 61.0
CSS0002886 Camellia sinensis var. sinensis HOM05D001089 ORTHO05D000920 2.8e-28 129.4 162 48.1
CSS0010299 Camellia sinensis var. sinensis HOM05D001089 ORTHO05D000920 2.8e-28 129.4 162 48.1
vmacro17875 Vaccinium macrocarpon HOM05D001089 ORTHO05D000920 1.2e-26 124.0 162 45.7
PSO675G5406 Papaver somniferum HOM05D001089 ORTHO05D000920 2.0e-26 123.2 161 43.5
PSO541G4920 Papaver somniferum HOM05D001089 ORTHO05D000920 2.6e-26 122.9 161 43.5
Dinv26787 Davidia involucrata HOM05D001089 ORTHO05D000920 3.8e-25 119.0 162 45.1
Aqoxy6G00993 Aquilegia oxysepala HOM05D001089 ORTHO05D000920 4.9e-25 118.6 166 42.8
COL.COLO4_22161 Corchorus olitorius HOM05D001089 ORTHO05D000920 8.4e-25 117.9 162 41.4
MD15G1271400 Malus domestica HOM05D001089 ORTHO05D000920 1.4e-24 117.1 165 42.4
Eucgr.I02489 Eucalyptus grandis HOM05D001089 ORTHO05D000920 1.9e-24 116.7 175 39.4
MSTRG.3400 Avicennia marina HOM05D001089 ORTHO05D000920 2.4e-24 116.3 163 43.6
Hma1.2p1_0261F.1_g104810 Hydrangea macrophylla HOM05D001089 ORTHO05D000920 2.4e-24 116.3 162 45.1
Oeu032906.1 Olea europaea HOM05D001089 ORTHO05D000920 3.2e-24 115.9 162 43.2
Cpa.g.sc15.114 Carica papaya HOM05D001089 ORTHO05D000920 4.2e-24 115.5 167 41.3
Rhsim08G0110300 Rhododendron simsii HOM05D001089 ORTHO05D000920 5.4e-24 115.2 162 43.8
Thecc.01G044000 Theobroma cacao HOM05D001089 ORTHO05D000920 7.1e-24 114.8 162 40.7
DCAR_010956 Daucus carota HOM05D001089 ORTHO05D000920 1.2e-23 114.0 178 41.0
Duzib147G0836 Durio zibethinus HOM05D001089 ORTHO05D000920 1.2e-23 114.0 162 40.7
TWI73G0853 Tripterygium wilfordii HOM05D001089 ORTHO05D000920 1.2e-23 114.0 176 38.6
GSVIVG01019044001 Vitis vinifera HOM05D001089 ORTHO05D000920 1.6e-23 113.6 175 38.9
Actinidia19150 Actinidia chinensis HOM05D001089 ORTHO05D000920 2.7e-23 112.8 162 43.2
MBI16_g10974_MAGBIO Magnolia biondii HOM05D001089 ORTHO05D000920 4.6e-23 112.1 160 40.6
Nitab4.5_0000483g0030 Nicotiana tabacum HOM05D001089 ORTHO05D000920 4.6e-23 112.1 162 41.4
Oeu043833.1 Olea europaea HOM05D001089 ORTHO05D000920 4.6e-23 112.1 161 40.4
CAN.G836.10 Capsicum annuum HOM05D001089 ORTHO05D000920 6.0e-23 111.7 162 42.0
Cfa004249 Carpinus fangiana HOM05D001089 ORTHO05D000920 1.0e-22 110.9 163 40.5
Lj4C134G13 Lonicera japonica HOM05D001089 ORTHO05D000920 1.0e-22 110.9 161 41.6
Prupe.7G146800 Prunus persica HOM05D001089 ORTHO05D000920 1.0e-22 110.9 165 41.2
Haze_15150 Corylus avellana HOM05D001089 ORTHO05D000920 1.3e-22 110.5 161 39.8
Duzib264G0668 Durio zibethinus HOM05D001089 ORTHO05D000920 1.7e-22 110.2 162 39.5
Lalb_Chr16g0378031 Lupinus albus HOM05D001089 ORTHO05D000920 1.7e-22 110.2 162 38.9
Nitab4.5_0004932g0030 Nicotiana tabacum HOM05D001089 ORTHO05D000920 2.3e-22 109.8 162 40.1
Potri.007G032800 Populus trichocarpa HOM05D001089 ORTHO05D000920 3.0e-22 109.4 176 39.8
TAR628G1685 Trochodendron aralioides HOM05D001089 ORTHO05D000920 3.0e-22 109.4 166 41.0
Sabra07G0028700 Salix brachista HOM05D001089 ORTHO05D000920 3.9e-22 109.0 176 40.3
Solyc02g089950.2 Solanum lycopersicum HOM05D001089 ORTHO05D000920 3.9e-22 109.0 162 40.1
MD02G1156900 Malus domestica HOM05D001089 ORTHO05D000920 5.1e-22 108.6 165 40.0
Lsat_1_v5_gn_4_176201 Lactuca sativa HOM05D001089 ORTHO05D000920 6.6e-22 108.2 167 38.3
Dinv39935 Davidia involucrata HOM05D001089 ORTHO05D000920 8.7e-22 107.8 162 42.6
QL06p044492 Quercus lobata HOM05D001089 ORTHO05D000920 1.1e-21 107.5 162 37.7
CiPaw.02G014100 Carya illinoinensis HOM05D001089 ORTHO05D000920 1.5e-21 107.1 161 39.8
Duzib187G0231 Durio zibethinus HOM05D001089 ORTHO05D000920 1.5e-21 107.1 162 37.7
MELO3C007501.2 Cucumis melo HOM05D001089 ORTHO05D000920 1.9e-21 106.7 165 38.8
Lalb_Chr05g0227381 Lupinus albus HOM05D001089 ORTHO05D000920 1.9e-21 106.7 185 38.9
ClCG01G016300 Citrullus lanatus HOM05D001089 ORTHO05D000920 2.5e-21 106.3 164 41.5
Migut.K00849 Erythranthe guttata HOM05D001089 ORTHO05D000920 2.5e-21 106.3 167 41.3
arahy.Tifrunner.gnm1.ann1.QA5YK5 Arachis hypogaea HOM05D001089 ORTHO05D000920 3.3e-21 105.9 163 40.5
CiPaw.01G030500 Carya illinoinensis HOM05D001089 ORTHO05D000920 3.3e-21 105.9 161 37.9
CsaV3_6G042610 Cucumis sativus L. HOM05D001089 ORTHO05D000920 4.3e-21 105.5 165 38.8
Gorai.003G018200 Gossypium raimondii HOM05D001089 ORTHO05D000920 4.3e-21 105.5 162 38.3
Sopen02g034640 Solanum pennellii HOM05D001089 ORTHO05D000920 5.6e-21 105.1 162 38.9
Actinidia30993 Actinidia chinensis HOM05D001089 ORTHO05D000920 7.3e-21 104.8 163 42.3
FvH4_1g14330 Fragaria vesca HOM05D001089 ORTHO05D000920 7.3e-21 104.8 164 38.4
FAN19G2559 Fragaria x ananassa HOM05D001089 ORTHO05D000920 7.3e-21 104.8 164 38.4
PGSC0003DMG400010040 Solanum tuberosum HOM05D001089 ORTHO05D000920 7.3e-21 104.8 162 38.9
Manes.13G134400 Manihot esculenta HOM05D001089 ORTHO05D000920 9.6e-21 104.4 162 39.5
Peaxi162Scf00535g00416 Petunia axillaris HOM05D001089 ORTHO05D000920 9.6e-21 104.4 162 38.3
Cc07_g05290 Coffea canephora HOM05D001089 ORTHO05D000920 1.3e-20 104.0 161 38.5
Gohir.A02G162500 Gossypium hirsutum HOM05D001089 ORTHO05D000920 1.3e-20 104.0 162 38.9
RcHm_v2.0_Chr2g0103001 Rosa chinensis HOM05D001089 ORTHO05D000920 1.3e-20 104.0 164 38.4
TAR610G0004 Trochodendron aralioides HOM05D001089 ORTHO05D000920 1.3e-20 104.0 160 38.1
Lj2g0026204 Lotus japonicus HOM05D001089 ORTHO05D000920 1.6e-20 103.6 161 41.0
PGR119G1161 Punica granatum HOM05D001089 ORTHO05D000920 1.6e-20 103.6 163 38.7
MSTRG.15410 Avicennia marina HOM05D001089 ORTHO05D000920 2.1e-20 103.2 163 41.1
CANSAT01G0291 Cannabis sativa HOM05D001089 ORTHO05D000920 2.1e-20 103.2 165 40.6
FAN23G1164 Fragaria x ananassa HOM05D001089 ORTHO05D000920 2.1e-20 103.2 164 37.8
Atru.chr3.489 Acer truncatum HOM05D001089 ORTHO05D000920 2.8e-20 102.8 176 35.8
FAN26G3362 Fragaria x ananassa HOM05D001089 ORTHO05D000920 2.8e-20 102.8 164 38.4
Sed0007635 Sechium edule HOM05D001089 ORTHO05D000920 2.8e-20 102.8 164 39.0
arahy.Tifrunner.gnm1.ann1.YX3SGW Arachis hypogaea HOM05D001089 ORTHO05D000920 3.6e-20 102.4 163 40.5
Gohir.D03G018000 Gossypium hirsutum HOM05D001089 ORTHO05D000920 4.8e-20 102.1 162 37.7
FAN28G0961 Fragaria x ananassa HOM05D001089 ORTHO05D000920 6.2e-20 101.7 164 37.2
Aqoxy6G00995 Aquilegia oxysepala HOM05D001089 ORTHO05D000920 8.1e-20 101.3 166 39.2
AUR62003212 Chenopodium quinoa HOM05D001089 ORTHO05D000920 8.1e-20 101.3 170 38.8
THA.LOC104826822 Tarenaya hassleriana HOM05D001089 ORTHO05D000920 1.8e-19 100.1 167 37.7
unitig_736.g22254 Utricularia gibba HOM05D001089 ORTHO05D000920 1.8e-19 100.1 164 39.6
Glyma.02G060202 Glycine max HOM05D001089 ORTHO05D000920 2.4e-19 99.8 185 36.2
Lj4g0016712 Lotus japonicus HOM05D001089 ORTHO05D000920 4.0e-19 99.0 168 38.7
SGA_v2.0_scaffold62G21535 Striga asiatica HOM05D001089 ORTHO05D000920 4.0e-19 99.0 160 35.6
AL5G31000 Arabidopsis lyrata HOM05D001089 ORTHO05D000920 5.3e-19 98.6 168 38.7
Psat4g090280 Pisum sativum HOM05D001089 ORTHO05D000920 5.3e-19 98.6 182 34.6
Nn1g05125 Nelumbo nucifera HOM05D001089 ORTHO05D000920 6.9e-19 98.2 160 38.8
VMungo1215G2910 Vigna mungo HOM05D001089 ORTHO05D000920 6.9e-19 98.2 179 34.6
Carub.0005s1713 Capsella rubella HOM05D001089 ORTHO05D000920 1.5e-18 97.1 166 38.6
Medtr8g078495 Medicago truncatula HOM05D001089 ORTHO05D000920 1.5e-18 97.1 180 36.1
Hund14128 Selenicereus undatus HOM05D001089 ORTHO05D000920 1.5e-18 97.1 167 38.3
Sc03g0001060 Simmondsia chinensis HOM05D001089 ORTHO05D000920 1.5e-18 97.1 182 34.1
Glyma.16G143000 Glycine max HOM05D001089 ORTHO05D000920 5.8e-18 95.1 186 33.9
Nn5g29472 Nelumbo nucifera HOM05D001089 ORTHO05D000920 5.8e-18 95.1 160 38.1
DCAR_025662 Daucus carota HOM05D001089 ORTHO05D000920 7.6e-18 94.7 162 38.9
Zm00001eb030800 Zea mays HOM05D001089 ORTHO05D000920 9.9e-18 94.4 150 41.3
Zm00001eb030840 Zea mays HOM05D001089 ORTHO05D000920 9.9e-18 94.4 150 41.3
Aa31LG4G18920 Aethionema arabicum HOM05D001089 ORTHO05D000920 1.3e-17 94.0 162 37.7
Glyma.01G180000 Glycine max HOM05D001089 ORTHO05D000920 1.3e-17 94.0 179 33.0
HanXRQChr09g0265131 Helianthus annuus HOM05D001089 ORTHO05D000920 1.3e-17 94.0 172 36.0
Potri.005G129700 Populus trichocarpa HOM05D001089 ORTHO05D000920 1.3e-17 94.0 176 36.4
Phvul.003G250400 Phaseolus vulgaris HOM05D001089 ORTHO05D000920 2.9e-17 92.8 180 33.3
Glyma.11G062200 Glycine max HOM05D001089 ORTHO05D000920 6.4e-17 91.7 174 35.1
AT3G50780 Arabidopsis thaliana HOM05D001089 ORTHO05D000920 1.4e-16 90.5 166 39.2
Thhalv10010286m.g Eutrema salsugineum HOM05D001089 ORTHO05D000920 1.9e-16 90.1 166 37.3
ATR0733G031 Amborella trichopoda HOM05D001089 ORTHO05D000920 4.2e-16 89.0 163 38.7
Hund16570 Selenicereus undatus HOM05D001089 ORTHO05D000920 9.3e-16 87.8 162 34.6
Sp5g11450 Schrenkiella parvula HOM05D001089 ORTHO05D000920 1.2e-15 87.4 174 34.5
VMungo0251G0650 Vigna mungo HOM05D001089 ORTHO05D000920 1.6e-15 87.0 188 29.8
EL10Ac6g14866 Beta vulgaris HOM05D001089 ORTHO05D000920 3.5e-15 85.9 165 35.8
arahy.Tifrunner.gnm1.ann1.9RI59H Arachis hypogaea HOM05D001089 ORTHO05D000920 1.3e-14 84.0 175 34.3
CARHR160290 Cardamine hirsuta HOM05D001089 ORTHO05D000920 1.3e-14 84.0 171 36.8
Ah.03g142240 Amaranthus hybridus HOM05D001089 ORTHO05D000920 1.8e-14 83.6 156 35.3
BcaB01g00582 Brassica carinata HOM05D001089 ORTHO05D000920 2.3e-14 83.2 171 34.5
MBI16_g13156_MAGBIO Magnolia biondii HOM05D001089 ORTHO05D000920 2.3e-14 83.2 160 35.6
Phvul.002G024700 Phaseolus vulgaris HOM05D001089 ORTHO05D000920 2.3e-14 83.2 174 32.2
A09p43830 Brassica napus HOM05D001089 ORTHO05D000920 3.9e-14 82.4 168 36.3
C08p25930 Brassica napus HOM05D001089 ORTHO05D000920 3.9e-14 82.4 168 36.3
ECA232G1738 Erigeron canadensis HOM05D001089 ORTHO05D000920 1.1e-13 80.9 172 34.3
Ca_22240_v3 Cicer arietinum L. HOM05D001089 ORTHO05D000920 2.5e-13 79.7 173 34.1
TPR.G31556 Trifolium pratense HOM05D001089 ORTHO05D000920 4.8e-12 75.5 171 30.4
BolC8t50209H Brassica oleracea HOM05D001089 ORTHO05D000920 1.1e-11 74.3 168 33.9
arahy.Tifrunner.gnm1.ann1.Q0FKJ2 Arachis hypogaea HOM05D001089 ORTHO05D000920 4.0e-11 72.4 170 32.9
BcaC07g39540 Brassica carinata HOM05D001089 ORTHO05D000920 2.0e-10 70.1 170 31.2
CDE04G3104 Ceratophyllum demersum HOM05D001089 ORTHO05D000920 2.6e-10 69.7 173 32.4
BraA09t39842Z Brassica rapa HOM05D001089 ORTHO05D000920 1.3e-09 67.4 168 31.0
CDE04G1789 Ceratophyllum demersum HOM05D001089 ORTHO05D000920 7.1e-08 61.6 87 40.2
CDE06G0716 Ceratophyllum demersum HOM05D001089 ORTHO05D000920 1.6e-07 60.5 84 39.3


User provided reference genes

Program Settings