Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 0.0e+00 1326.6 693 100.0
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 0.0e+00 1189.5 693 89.9
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 0.0e+00 1138.3 696 85.3
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 3.9e-240 835.1 688 61.6
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 5.6e-239 831.2 686 61.5
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 6.9e-237 824.3 689 61.1
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 5.8e-236 821.2 688 60.3
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 1.7e-235 819.7 707 60.4
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 2.1e-233 812.8 688 59.6
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 8.7e-232 807.4 685 60.7
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.5e-231 805.8 686 60.3
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 3.3e-231 805.4 686 59.9
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.3e-230 803.5 674 61.3
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.6e-230 803.1 697 59.4
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 2.8e-230 802.4 686 60.8
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 3.7e-230 802.0 690 60.3
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 4.8e-230 801.6 686 60.2
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.3e-230 801.2 686 60.2
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 8.2e-230 800.8 696 60.5
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.1e-229 800.4 686 60.2
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-229 800.4 688 59.4
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.1e-229 798.5 696 59.8
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 9.0e-229 797.3 689 59.9
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.5e-228 796.6 698 60.0
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.0e-228 796.2 685 60.0
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.6e-228 795.8 686 59.9
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.4e-228 795.4 686 60.1
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 4.5e-228 795.0 686 58.2
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 4.5e-228 795.0 696 59.6
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.0e-227 793.9 687 59.4
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 5.0e-227 791.6 688 59.0
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.9e-226 789.6 686 59.2
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.2e-226 788.9 698 60.0
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 5.5e-226 788.1 688 58.9
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 5.5e-226 788.1 686 59.3
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 9.4e-226 787.3 684 58.9
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 2.1e-225 786.2 717 57.7
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 4.6e-225 785.0 702 57.1
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 7.9e-225 784.3 692 57.9
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 7.9e-225 784.3 686 57.7
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 1.4e-224 783.5 691 57.9
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.8e-224 783.1 689 59.7
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.8e-224 783.1 688 58.9
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 6.7e-224 781.2 701 58.6
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.1e-223 780.4 686 57.7
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 2.5e-223 779.2 705 58.4
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 2.5e-223 779.2 686 58.9
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.5e-223 779.2 687 58.5
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.3e-223 778.9 687 59.1
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 3.3e-223 778.9 688 59.6
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 5.7e-223 778.1 686 58.7
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 5.7e-223 778.1 667 58.9
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 5.7e-223 778.1 683 58.7
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.3e-222 776.9 683 58.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 2.2e-222 776.2 645 60.2
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 2.8e-222 775.8 688 59.4
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.5e-220 770.0 646 60.7
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 2.0e-220 769.6 688 57.6
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 1.3e-219 766.9 688 58.9
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 3.8e-219 765.4 687 59.0
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 3.8e-219 765.4 698 58.0
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 1.1e-218 763.8 690 58.1
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.1e-218 763.8 687 57.6
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.1e-218 763.8 687 57.4
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.2e-218 761.9 683 58.1
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 7.2e-218 761.1 688 56.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 9.4e-218 760.8 669 59.2
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 9.4e-218 760.8 692 57.8
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.2e-217 760.4 687 57.6
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 2.7e-217 759.2 685 57.7
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 2.7e-217 759.2 671 58.4
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.0e-216 757.3 668 57.5
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.1e-215 753.8 688 56.7
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.5e-215 753.4 687 56.8
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.5e-215 753.4 686 56.9
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.5e-215 753.4 708 57.3
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.6e-215 752.7 692 58.1
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 7.4e-215 751.1 666 59.3
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 7.4e-215 751.1 721 55.8
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 9.7e-215 750.7 688 57.3
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 9.7e-215 750.7 708 56.4
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 1.7e-214 750.0 688 56.8
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 4.8e-214 748.4 688 56.7
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 4.8e-214 748.4 687 56.9
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 6.3e-214 748.0 691 57.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.4e-213 746.9 647 59.0
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 1.8e-213 746.5 688 56.8
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.8e-213 746.5 685 57.7
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 7.0e-213 744.6 688 56.4
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 7.0e-213 744.6 687 57.4
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-212 743.4 737 54.8
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 1.5e-212 743.4 684 56.9
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.3e-211 740.3 687 57.2
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-209 733.8 741 54.1
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.7e-209 732.6 685 55.6
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 4.7e-209 731.9 646 58.2
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.8e-208 729.9 711 55.4
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 2.0e-207 726.5 690 56.2
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 4.4e-207 725.3 686 55.7
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 4.8e-206 721.8 710 53.9
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.1e-205 719.2 685 54.5
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 7.0e-205 718.0 644 56.5
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 9.1e-205 717.6 687 55.5
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.6e-204 716.1 684 55.3
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 3.5e-204 715.7 798 49.6
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 5.0e-203 711.8 678 54.6
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 7.2e-202 708.0 669 57.1
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 1.2e-201 707.2 702 54.1
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 3.6e-201 705.7 686 54.2
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 3.6e-201 705.7 705 55.0
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 6.7e-200 701.4 719 53.5
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.2e-199 700.7 685 54.7
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.3e-198 697.2 687 54.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 5.3e-197 691.8 796 49.4
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 2.0e-196 689.9 648 55.7
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 5.9e-196 688.3 648 55.4
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 5.0e-195 685.3 641 56.0
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 6.5e-195 684.9 618 57.3
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.1e-194 684.1 647 55.0
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 2.1e-193 679.9 643 54.7
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 1.3e-190 670.6 655 54.0
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 1.3e-190 670.6 655 54.0
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 4.8e-190 668.7 655 54.0
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 8.3e-190 667.9 672 54.0
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 5.4e-189 665.2 654 53.2
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.8e-187 659.1 686 52.8
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.6e-185 652.5 696 51.0
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 6.1e-185 651.7 697 51.1
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.0e-184 651.0 729 50.1
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.0e-184 651.0 692 52.0
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.8e-182 642.9 607 54.5
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 1.8e-181 640.2 619 54.9
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 6.1e-177 625.2 614 54.2
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 4.0e-176 622.5 739 48.0
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 3.9e-163 579.3 638 47.8
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 2.0e-159 567.0 550 56.5
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.1e-156 557.0 652 48.5
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 2.6e-151 540.0 688 46.5
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 5.8e-143 512.3 541 51.8
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.3e-139 501.1 502 53.0
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 3.6e-137 493.0 694 42.8
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.8e-121 439.5 559 45.1
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.9e-118 430.3 354 63.0
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.4e-112 410.6 434 51.8
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.7e-105 387.9 361 56.2
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 7.0e-96 355.9 337 55.5
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 3.6e-92 343.6 366 52.2
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 6.5e-86 322.8 307 56.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 1.5e-85 321.6 427 44.7
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 2.1e-84 317.8 522 39.8
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 3.8e-78 297.0 299 51.2
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.8e-75 288.1 321 48.6
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.5e-74 285.0 420 43.6
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 2.8e-68 264.2 381 44.6
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 2.3e-67 261.2 698 31.8
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 4.9e-57 226.9 653 30.5
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 4.7e-52 210.3 293 43.7
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.2e-52 209.9 156 67.3
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.4e-50 203.8 191 56.5
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.1e-44 183.0 261 42.5
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.0e-43 180.6 223 43.9
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 6.8e-43 179.9 299 37.5
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.1e-32 146.0 138 52.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-30 137.5 98 70.4
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 5.1e-30 137.1 79 82.3
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 4.3e-29 134.0 94 71.3
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.0e-27 126.3 81 69.1
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 1.5e-26 125.6 88 65.9
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 5.8e-26 123.6 116 54.3
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 2.4e-24 118.2 192 40.1
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.1e-23 115.2 163 42.3
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.1e-23 115.2 190 36.8
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 9.6e-21 106.3 295 31.2
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-17 95.9 199 33.7
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 6.7e-14 83.6 59 66.1
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 5.6e-13 80.5 140 36.4
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 1.2e-10 72.8 85 48.2
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.2e-10 72.8 142 35.9
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.8e-06 58.9 71 46.5
C03p03420 Brassica napus HOM05D029148 ORTHO05D032464 3.0e-06 58.2 38 76.3
BolC3t12883H Brassica oleracea HOM05D029148 ORTHO05D032464 3.0e-06 58.2 38 76.3
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 3.9e-06 57.8 113 31.9


User provided reference genes

Program Settings