Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 0.0e+00 1312.7 748 100.0
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 6.1e-311 1070.5 771 83.0
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.6e-226 790.0 711 70.0
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.1e-94 352.1 828 37.8
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.4e-89 335.1 835 37.2
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.5e-88 331.6 828 37.0
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.9e-87 326.6 828 36.7
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 4.9e-87 326.6 815 37.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.1e-86 325.5 836 38.6
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-86 325.1 469 47.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 3.2e-86 323.9 800 37.4
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 7.0e-86 322.8 805 37.4
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.6e-85 321.6 804 36.4
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 6.0e-85 319.7 789 37.4
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 7.8e-85 319.3 821 38.2
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 2.3e-84 317.8 600 41.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.0e-84 317.4 816 36.5
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.0e-84 316.6 786 37.0
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 6.6e-84 316.2 587 45.3
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.1e-83 315.5 800 36.5
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.5e-83 315.1 805 36.3
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.5e-83 315.1 615 40.2
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.5e-83 314.3 574 41.6
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.5e-83 314.3 599 40.7
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 5.6e-83 313.2 832 38.1
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 9.5e-83 312.4 485 47.4
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.2e-82 312.0 795 39.4
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.6e-82 311.6 827 37.1
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 6.2e-82 309.7 804 35.9
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 6.2e-82 309.7 430 53.7
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 6.2e-82 309.7 786 37.8
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.1e-82 309.3 824 34.8
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 1.8e-81 308.1 825 35.3
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.3e-81 307.8 390 49.5
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 3.1e-81 307.4 476 51.9
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.4e-80 303.9 823 35.4
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 7.5e-80 302.8 811 40.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.3e-79 302.0 546 41.4
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.7e-79 300.4 811 38.7
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.4e-79 299.7 544 41.2
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.1e-78 298.9 806 37.5
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.4e-78 298.5 811 38.0
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 2.4e-78 297.7 782 37.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.2e-78 297.4 805 35.2
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-77 295.4 546 44.9
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.5e-77 293.9 780 35.3
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.6e-77 293.5 785 35.9
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.0e-76 292.4 851 37.4
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.3e-76 292.0 469 48.8
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.3e-76 292.0 810 39.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.3e-76 291.2 782 35.5
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 3.9e-76 290.4 766 39.8
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 3.9e-76 290.4 807 39.0
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.1e-76 290.0 821 34.3
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 6.6e-76 289.7 779 38.0
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.9e-75 288.1 536 46.3
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.3e-75 287.3 826 34.9
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 5.6e-75 286.6 779 37.1
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 7.3e-75 286.2 806 35.1
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 9.5e-75 285.8 826 35.2
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.2e-74 285.4 850 37.3
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 4.7e-74 283.5 773 38.4
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.4e-73 282.0 776 38.4
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.4e-73 282.0 852 38.1
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.8e-73 281.6 502 45.6
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-73 280.8 787 35.3
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.2e-72 278.9 645 40.6
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.2e-72 278.9 786 34.9
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.5e-72 278.5 902 35.3
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.0e-72 278.1 805 34.3
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 3.4e-72 277.3 822 38.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 3.4e-72 277.3 641 36.3
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 5.8e-72 276.6 760 40.1
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 7.6e-72 276.2 791 39.6
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.3e-71 275.4 777 38.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 2.2e-71 274.6 824 36.7
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.9e-71 274.2 761 35.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 3.8e-71 273.9 495 48.1
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 4.9e-71 273.5 678 39.5
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 4.9e-71 273.5 861 36.9
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 6.4e-71 273.1 822 38.8
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.1e-70 272.3 784 38.3
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 9.2e-70 269.2 580 42.6
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.2e-69 268.9 827 38.1
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.7e-69 267.7 774 39.0
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.5e-69 267.3 779 36.5
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.3e-68 265.4 775 39.7
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.7e-68 265.0 766 37.2
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 6.6e-68 263.1 464 41.4
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 8.7e-68 262.7 827 34.0
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.1e-67 262.3 781 38.0
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.5e-67 261.9 628 41.7
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.3e-67 260.8 814 33.0
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 7.3e-67 259.6 761 37.7
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 7.3e-67 259.6 836 37.4
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 9.6e-67 259.2 727 33.3
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 2.1e-66 258.1 836 37.4
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 2.8e-66 257.7 648 41.0
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 3.6e-66 257.3 658 39.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.6e-66 257.3 757 34.9
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.4e-65 255.4 798 34.5
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 6.9e-65 253.1 795 35.2
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.5e-64 251.9 666 38.9
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.0e-64 251.5 753 38.0
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 2.6e-64 251.1 680 37.9
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 9.9e-64 249.2 763 36.8
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.3e-63 248.8 845 36.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.2e-63 248.1 831 35.4
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.1e-62 245.7 669 39.2
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.4e-62 245.4 575 42.8
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.4e-62 244.6 608 40.3
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 2.4e-62 244.6 771 37.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 2.4e-62 244.6 791 36.9
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.4e-62 244.6 793 34.0
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 3.2e-62 244.2 298 52.3
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.4e-62 243.4 776 36.0
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.7e-61 241.1 493 44.2
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.7e-61 241.1 778 36.4
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 3.5e-61 240.7 491 44.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.7e-60 238.4 599 39.6
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 3.9e-60 237.3 817 36.2
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 7.3e-59 233.0 754 37.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 7.3e-59 233.0 814 36.5
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.1e-57 229.2 780 36.2
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-57 228.0 760 34.5
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 3.0e-52 211.1 818 34.6
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 8.1e-50 203.0 792 34.2
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.4e-49 202.2 681 36.0
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.0e-49 200.7 1003 29.1
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 2.4e-46 191.4 832 33.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.3e-44 185.7 318 50.0
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 3.0e-44 184.5 823 32.6
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.9e-38 165.2 441 32.9
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.2e-38 164.5 571 33.1
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.6e-37 160.6 417 31.7
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.3e-35 154.5 778 28.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 4.3e-35 154.1 178 54.5
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 9.7e-35 152.9 386 44.0
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.6e-34 152.1 412 30.8
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.8e-33 148.7 651 33.2
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 5.3e-33 147.1 429 33.3
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.7e-31 142.1 112 67.0
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.6e-29 135.6 352 37.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.6e-24 118.2 576 30.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.2e-22 110.9 86 70.9
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 4.2e-22 110.9 100 61.0
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.8e-20 105.5 136 47.8
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.0e-19 102.1 454 27.1
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.2e-16 92.8 173 41.6
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.9e-15 88.2 664 25.6
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 3.8e-15 87.8 648 25.8
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.1e-14 86.3 78 60.3
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.6e-13 81.3 105 45.7
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.0e-12 79.7 61 67.2
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-12 79.3 85 54.1
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 1.8e-12 79.0 54 70.4
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.8e-12 79.0 76 56.6
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-11 76.3 66 59.1
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 1.1e-09 69.7 61 62.3
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-09 69.3 54 68.5
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.1e-09 67.8 54 66.7
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.3e-09 67.4 72 54.2
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.0e-09 67.0 76 52.6
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.0e-09 67.0 55 63.6
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-08 66.2 50 72.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.2e-08 66.2 50 72.0
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-08 64.7 45 73.3
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.5e-08 64.3 49 65.3
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.5e-08 64.3 45 73.3
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.3e-07 62.8 51 64.7
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-07 61.2 45 68.9
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 8.5e-07 60.1 60 55.0
MBI04_g25319_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 8.5e-07 60.1 126 38.1


User provided reference genes

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