Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb142450 Zea mays HOM05D003399 ORTHO05D003393 2.1e-140 502.7 312 100.0
Zm00001eb363740 Zea mays HOM05D003399 ORTHO05D003393 1.0e-38 164.9 300 57.0
Os01g0928400 Oryza sativa ssp. japonica HOM05D003399 ORTHO05D003393 1.5e-21 107.8 116 58.6
Glyma.18G282500 Glycine max HOM05D003399 ORTHO05D003393 5.7e-13 79.3 105 42.9
Medtr7g021270 Medicago truncatula HOM05D003399 ORTHO05D003393 1.1e-11 75.1 113 41.6
Duzib248G1620 Durio zibethinus HOM05D003399 ORTHO05D003393 1.8e-11 74.3 65 60.0
MBI07_g40352_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 1.8e-11 74.3 107 43.9
Dinv12132 Davidia involucrata HOM05D003399 ORTHO05D003393 2.4e-11 73.9 85 47.1
Lj1g0015103 Lotus japonicus HOM05D003399 ORTHO05D003393 2.4e-11 73.9 115 42.6
VMungo1383G2170 Vigna mungo HOM05D003399 ORTHO05D003393 3.1e-11 73.6 111 42.3
EL10Ac6g13590 Beta vulgaris HOM05D003399 ORTHO05D003393 4.1e-11 73.2 84 47.6
Potri.001G062700 Populus trichocarpa HOM05D003399 ORTHO05D003393 4.1e-11 73.2 98 43.9
Actinidia30598 Actinidia chinensis HOM05D003399 ORTHO05D003393 5.3e-11 72.8 66 59.1
Aqoxy3G01823 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 5.3e-11 72.8 101 45.5
arahy.Tifrunner.gnm1.ann1.FX1Z4A Arachis hypogaea HOM05D003399 ORTHO05D003393 5.3e-11 72.8 71 54.9
arahy.Tifrunner.gnm1.ann1.ULYV8E Arachis hypogaea HOM05D003399 ORTHO05D003393 5.3e-11 72.8 71 54.9
Manes.08G102600 Manihot esculenta HOM05D003399 ORTHO05D003393 5.3e-11 72.8 65 60.0
Oeu003275.1 Olea europaea HOM05D003399 ORTHO05D003393 5.3e-11 72.8 86 51.2
ClCG07G011810 Citrullus lanatus HOM05D003399 ORTHO05D003393 6.9e-11 72.4 65 60.0
Peaxi162Scf00234g01011 Petunia axillaris HOM05D003399 ORTHO05D003393 6.9e-11 72.4 65 56.9
MELO3C017803.2 Cucumis melo HOM05D003399 ORTHO05D003393 9.0e-11 72.0 65 58.5
Gohir.D12G144800 Gossypium hirsutum HOM05D003399 ORTHO05D003393 9.0e-11 72.0 88 47.7
Oeu055475.1 Olea europaea HOM05D003399 ORTHO05D003393 9.0e-11 72.0 79 48.1
Psat3g189760 Pisum sativum HOM05D003399 ORTHO05D003393 9.0e-11 72.0 98 43.9
Sed0004087 Sechium edule HOM05D003399 ORTHO05D003393 9.0e-11 72.0 60 58.3
Gorai.008G156200 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.2e-10 71.6 88 47.7
Nitab4.5_0014700g0010 Nicotiana tabacum HOM05D003399 ORTHO05D003393 1.5e-10 71.2 65 55.4
Peaxi162Scf00128g01764 Petunia axillaris HOM05D003399 ORTHO05D003393 1.5e-10 71.2 123 39.8
Potri.003G164800 Populus trichocarpa HOM05D003399 ORTHO05D003393 1.5e-10 71.2 113 44.2
Sc11g0000180 Simmondsia chinensis HOM05D003399 ORTHO05D003393 1.5e-10 71.2 61 57.4
TPR.G2909 Trifolium pratense HOM05D003399 ORTHO05D003393 1.5e-10 71.2 145 37.2
A02p01800 Brassica napus HOM05D003399 ORTHO05D003393 2.0e-10 70.9 59 62.7
BraA02t05155Z Brassica rapa HOM05D003399 ORTHO05D003393 2.0e-10 70.9 59 62.7
CSS0040305 Camellia sinensis var. sinensis HOM05D003399 ORTHO05D006018 2.0e-10 70.9 59 59.3
Thhalv10015692m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 2.0e-10 70.9 70 54.3
Glyma.08G258100 Glycine max HOM05D003399 ORTHO05D003393 2.0e-10 70.9 115 41.7
Sp6g30740 Schrenkiella parvula HOM05D003399 ORTHO05D003393 2.0e-10 70.9 70 54.3
Thecc.02G195400 Theobroma cacao HOM05D003399 ORTHO05D003393 2.0e-10 70.9 75 56.0
Actinidia22126 Actinidia chinensis HOM05D003399 ORTHO05D003393 2.6e-10 70.5 60 58.3
Duzib052G0315 Durio zibethinus HOM05D003399 ORTHO05D003393 2.6e-10 70.5 65 56.9
Gohir.A12G140200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.6e-10 70.5 92 44.6
Gohir.D02G174700 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.6e-10 70.5 85 49.4
Lalb_Chr10g0092161 Lupinus albus HOM05D003399 ORTHO05D003393 2.6e-10 70.5 99 43.4
MD13G1127900 Malus domestica HOM05D003399 ORTHO05D003393 2.6e-10 70.5 59 59.3
Nitab4.5_0009065g0010 Nicotiana tabacum HOM05D003399 ORTHO05D003393 2.6e-10 70.5 65 55.4
Duzib132G1194 Durio zibethinus HOM05D003399 ORTHO05D003393 3.4e-10 70.1 65 56.9
TWI75G1177 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 3.4e-10 70.1 74 51.4
Os04g0396500 Oryza sativa ssp. japonica HOM05D003399 ORTHO05D003393 4.5e-10 69.7 107 43.0
HPP92_023020 Vanilla planifolia HOM05D003399 ORTHO05D003393 4.5e-10 69.7 89 46.1
HPP92_023093 Vanilla planifolia HOM05D003399 ORTHO05D003393 4.5e-10 69.7 89 46.1
Aa31LG3G14410 Aethionema arabicum HOM05D003399 ORTHO05D003393 5.9e-10 69.3 59 61.0
A10p24960 Brassica napus HOM05D003399 ORTHO05D003393 5.9e-10 69.3 99 48.5
BraA10t44558Z Brassica rapa HOM05D003399 ORTHO05D003393 5.9e-10 69.3 99 48.5
SalBow7G1980 Salvia bowleyana HOM05D003399 ORTHO05D003393 5.9e-10 69.3 117 43.6
AL6G23870 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 7.6e-10 68.9 102 44.1
Carub.0006s1142 Capsella rubella HOM05D003399 ORTHO05D003393 7.6e-10 68.9 102 45.1
Migut.K01039 Erythranthe guttata HOM05D003399 ORTHO05D003393 7.6e-10 68.9 82 50.0
Nn4g22186 Nelumbo nucifera HOM05D003399 ORTHO05D003393 7.6e-10 68.9 117 41.9
Phvul.008G018800 Phaseolus vulgaris HOM05D003399 ORTHO05D003393 7.6e-10 68.9 94 47.9
Sabra03G0119900 Salix brachista HOM05D003399 ORTHO05D003393 7.6e-10 68.9 78 52.6
Solyc01g009720.2 Solanum lycopersicum HOM05D003399 ORTHO05D003393 7.6e-10 68.9 59 57.6
Sopen01g005220 Solanum pennellii HOM05D003399 ORTHO05D003393 7.6e-10 68.9 59 57.6
MSTRG.465 Avicennia marina HOM05D003399 ORTHO05D003393 1.0e-09 68.6 59 61.0
ECA233G3644 Erigeron canadensis HOM05D003399 ORTHO05D003393 1.0e-09 68.6 61 57.4
FAN07G1125 Fragaria x ananassa HOM05D003399 ORTHO05D003393 1.0e-09 68.6 61 55.7
PSO017G5218 Papaver somniferum HOM05D003399 ORTHO05D003393 1.0e-09 68.6 131 43.5
QL03p050027 Quercus lobata HOM05D003399 ORTHO05D003393 1.0e-09 68.6 98 45.9
SGA_v2.0_scaffold258G45789 Striga asiatica HOM05D003399 ORTHO05D003393 1.0e-09 68.6 71 50.7
TWI36G0503 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 1.0e-09 68.6 65 56.9
Atru.chr11.2413 Acer truncatum HOM05D003399 ORTHO05D003393 1.3e-09 68.2 66 57.6
BcaB01g05366 Brassica carinata HOM05D003399 ORTHO05D003393 1.3e-09 68.2 70 52.9
BcaNung01873 Brassica carinata HOM05D003399 ORTHO05D003393 1.3e-09 68.2 59 61.0
C02p06020 Brassica napus HOM05D003399 ORTHO05D003393 1.3e-09 68.2 59 61.0
BolC2t06544H Brassica oleracea HOM05D003399 ORTHO05D003393 1.3e-09 68.2 59 61.0
Nn3g16314 Nelumbo nucifera HOM05D003399 ORTHO05D003393 1.3e-09 68.2 117 40.2
Aqoxy5G03202 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 1.7e-09 67.8 66 53.0
BcaC04g19132 Brassica carinata HOM05D003399 ORTHO05D003393 1.7e-09 67.8 93 43.0
A03p05900 Brassica napus HOM05D003399 ORTHO05D003393 1.7e-09 67.8 95 48.4
BraA03t09928Z Brassica rapa HOM05D003399 ORTHO05D003393 1.7e-09 67.8 95 48.4
FvH4_4g22950 Fragaria vesca HOM05D003399 ORTHO05D003393 1.7e-09 67.8 59 57.6
FAN12G0769 Fragaria x ananassa HOM05D003399 ORTHO05D003393 1.7e-09 67.8 59 57.6
Oeu019432.1 Olea europaea HOM05D003399 ORTHO05D003393 1.7e-09 67.8 59 55.9
TAR374G0208 Trochodendron aralioides HOM05D003399 ORTHO05D003393 1.7e-09 67.8 133 38.3
Actinidia34007 Actinidia chinensis HOM05D003399 ORTHO05D003393 2.2e-09 67.4 69 53.6
CARHR200200 Cardamine hirsuta HOM05D003399 ORTHO05D003393 2.2e-09 67.4 109 40.4
MD16G1128300 Malus domestica HOM05D003399 ORTHO05D003393 2.2e-09 67.4 59 57.6
Cc11_g17500 Coffea canephora HOM05D003399 ORTHO05D003393 2.9e-09 67.0 59 55.9
HanXRQChr12g0362291 Helianthus annuus HOM05D003399 ORTHO05D003393 2.9e-09 67.0 61 55.7
Prupe.1G218100 Prunus persica HOM05D003399 ORTHO05D003393 2.9e-09 67.0 59 55.9
THA.LOC104807363 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 2.9e-09 67.0 142 40.8
TWI18G1150 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 2.9e-09 67.0 59 57.6
CiPaw.05G103400 Carya illinoinensis HOM05D003399 ORTHO05D003393 3.8e-09 66.6 59 59.3
CiPaw.06G108000 Carya illinoinensis HOM05D003399 ORTHO05D003393 3.8e-09 66.6 94 43.6
Manes.09G186300 Manihot esculenta HOM05D003399 ORTHO05D003393 3.8e-09 66.6 123 39.8
TAR622G1322 Trochodendron aralioides HOM05D003399 ORTHO05D003393 3.8e-09 66.6 120 39.2
DCAR_024622 Daucus carota HOM05D003399 ORTHO05D003393 5.0e-09 66.2 59 55.9
Eucgr.G01956 Eucalyptus grandis HOM05D003399 ORTHO05D003393 5.0e-09 66.2 153 34.6
Gorai.005G196300 Gossypium raimondii HOM05D003399 ORTHO05D003393 5.0e-09 66.2 102 47.1
THA.LOC104820532 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 5.0e-09 66.2 133 39.1
AT5G13250 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 6.5e-09 65.9 99 46.5
Lsat_1_v5_gn_4_1321 Lactuca sativa HOM05D003399 ORTHO05D003393 6.5e-09 65.9 125 37.6
Oeu044505.1 Olea europaea HOM05D003399 ORTHO05D003393 6.5e-09 65.9 59 57.6
C03p06820 Brassica napus HOM05D003399 ORTHO05D003393 8.5e-09 65.5 95 47.4
BolC3t13193H Brassica oleracea HOM05D003399 ORTHO05D003393 8.5e-09 65.5 95 47.4
FAN17G2315 Fragaria x ananassa HOM05D003399 ORTHO05D003393 8.5e-09 65.5 61 54.1
PSO478G0797 Papaver somniferum HOM05D003399 ORTHO05D003393 8.5e-09 65.5 131 42.7
HanXRQChr08g0210071 Helianthus annuus HOM05D003399 ORTHO05D003393 1.1e-08 65.1 61 52.5
PGR119G0713 Punica granatum HOM05D003399 ORTHO05D003393 1.1e-08 65.1 123 39.0
ATR0582G082 Amborella trichopoda HOM05D003399 ORTHO05D003393 1.4e-08 64.7 132 35.6
C09p63830 Brassica napus HOM05D003399 ORTHO05D003393 1.4e-08 64.7 122 38.5
CANSAT01G0203 Cannabis sativa HOM05D003399 ORTHO05D003393 1.4e-08 64.7 59 52.5
Gohir.D04G140300 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.4e-08 64.7 128 39.1
SEGI_20529 Sequoiadendron giganteum HOM05D001069 ORTHO05D003393 1.4e-08 64.7 103 40.8
BolC9t59223H Brassica oleracea HOM05D003399 ORTHO05D003393 1.9e-08 64.3 122 38.5
THA.LOC104825469 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 1.9e-08 64.3 110 41.8
TAR629G1336 Trochodendron aralioides HOM05D003399 ORTHO05D003393 2.5e-08 63.9 123 39.8
HPP92_007019 Vanilla planifolia HOM05D001069 ORTHO05D003393 2.5e-08 63.9 86 47.7
COL.COLO4_07618 Corchorus olitorius HOM05D003399 ORTHO05D003393 3.2e-08 63.5 91 40.7
Eucgr.B03547 Eucalyptus grandis HOM05D003399 ORTHO05D003393 3.2e-08 63.5 66 51.5
AT1G28080 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 4.2e-08 63.2 59 55.9
Carub.0001s2651 Capsella rubella HOM05D003399 ORTHO05D003393 4.2e-08 63.2 59 54.2
RcHm_v2.0_Chr4g0429231 Rosa chinensis HOM05D003399 ORTHO05D003393 4.2e-08 63.2 59 57.6
HPP92_011746 Vanilla planifolia HOM05D001069 ORTHO05D003393 5.5e-08 62.8 96 42.7
Ciclev10033818m.g Citrus clementina HOM05D003399 ORTHO05D003393 7.2e-08 62.4 65 52.3
AL1G41590 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 9.3e-08 62.0 59 54.2
Sp1g24260 Schrenkiella parvula HOM05D003399 ORTHO05D003393 9.3e-08 62.0 59 54.2
Aa31sc300G10 Aethionema arabicum HOM05D003399 ORTHO05D003393 1.2e-07 61.6 61 52.5
BcaB03g12138 Brassica carinata HOM05D003399 ORTHO05D003393 1.2e-07 61.6 59 54.2
A08p25920 Brassica napus HOM05D003399 ORTHO05D003393 1.2e-07 61.6 59 54.2
BraA08t34543Z Brassica rapa HOM05D003399 ORTHO05D003393 1.2e-07 61.6 59 54.2
CARHR027530 Cardamine hirsuta HOM05D003399 ORTHO05D003393 1.2e-07 61.6 59 54.2
Sc04g0010500 Simmondsia chinensis HOM05D003399 ORTHO05D003393 1.2e-07 61.6 60 51.7
HPP92_020103 Vanilla planifolia HOM05D003399 ORTHO05D003393 1.2e-07 61.6 130 38.5
Thhalv10009825m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 1.6e-07 61.2 59 54.2
GSVIVG01000970001 Vitis vinifera HOM05D003399 ORTHO05D003393 1.6e-07 61.2 65 50.8
Gohir.A03G151600 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.1e-07 60.8 103 45.6
PSO017G1762 Papaver somniferum HOM05D003399 ORTHO05D003393 2.1e-07 60.8 65 47.7
PSO478G0221 Papaver somniferum HOM05D003399 ORTHO05D003393 2.1e-07 60.8 60 50.0
Lalb_Chr04g0258081 Lupinus albus HOM05D003399 ORTHO05D003393 2.7e-07 60.5 70 47.1
BcaC05g26625 Brassica carinata HOM05D003399 ORTHO05D003393 3.6e-07 60.1 59 52.5
C05p26750 Brassica napus HOM05D003399 ORTHO05D003393 3.6e-07 60.1 59 52.5
BolC5t31399H Brassica oleracea HOM05D003399 ORTHO05D003393 3.6e-07 60.1 59 52.5
Gorai.012G125300 Gossypium raimondii HOM05D003399 ORTHO05D003393 3.6e-07 60.1 165 35.8
Mapoly0016s0017 Marchantia polymorpha HOM05D001069 ORTHO05D003393 3.6e-07 60.1 70 52.9
Os12g0479100 Oryza sativa ssp. japonica HOM05D003399 ORTHO05D003393 3.6e-07 60.1 46 58.7
Gohir.A04G101200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 4.6e-07 59.7 165 35.8
BolC3t19722H Brassica oleracea HOM05D003399 ORTHO05D003393 6.1e-07 59.3 59 52.5
A09p38010 Brassica napus HOM05D003399 ORTHO05D003393 1.0e-06 58.5 59 52.5
BraA09t39311Z Brassica rapa HOM05D003399 ORTHO05D003393 1.0e-06 58.5 59 52.5
Zm00001eb132990 Zea mays HOM05D003399 ORTHO05D003393 1.3e-06 58.2 47 57.4
C07p17320 Brassica napus HOM05D003399 ORTHO05D003393 1.8e-06 57.8 59 49.2
BolC7t42236H Brassica oleracea HOM05D003399 ORTHO05D003393 1.8e-06 57.8 59 49.2
Sed0023362 Sechium edule HOM05D003399 ORTHO05D003393 1.8e-06 57.8 61 49.2
ClCG06G001790 Citrullus lanatus HOM05D003399 ORTHO05D003393 2.3e-06 57.4 67 53.7
CsaV3_6G007830 Cucumis sativus L. HOM05D003399 ORTHO05D003393 3.0e-06 57.0 67 53.7
SEGI_21998 Sequoiadendron giganteum HOM05D001069 ORTHO05D003393 3.0e-06 57.0 61 54.1
THA.LOC104814204 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 3.0e-06 57.0 109 37.6
C03p74730 Brassica napus HOM05D003399 ORTHO05D003393 6.7e-06 55.8 59 50.8
MELO3C022349.2 Cucumis melo HOM05D003399 ORTHO05D003393 6.7e-06 55.8 66 50.0
Zm00001eb408820 Zea mays HOM05D003399 ORTHO05D003393 8.7e-06 55.5 48 60.4


User provided reference genes

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