Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb142110 Zea mays HOM05D002027 ORTHO05D017138 7.3e-76 287.3 166 100.0
Zm00001eb233470 Zea mays HOM05D002027 ORTHO05D017138 7.3e-76 287.3 166 100.0
Zm00001eb372470 Zea mays HOM05D002027 ORTHO05D017138 7.3e-76 287.3 166 100.0
Zm00001eb238700 Zea mays HOM05D002027 ORTHO05D017138 2.4e-63 245.7 172 88.4
Zm00001eb373710 Zea mays HOM05D002027 ORTHO05D007928 1.4e-31 140.2 69 97.1
Zm00001eb429020 Zea mays HOM05D002027 ORTHO05D017138 3.3e-28 129.0 82 98.8
Zm00001eb293060 Zea mays HOM05D002027 ORTHO05D017138 6.9e-26 121.3 78 100.0
Os06g0203600 Oryza sativa ssp. japonica HOM05D002027 ORTHO05D007928 5.5e-23 111.7 69 73.9
Zm00001eb146580 Zea mays HOM05D002027 ORTHO05D017138 1.0e-21 107.5 72 100.0
Zm00001eb211820 Zea mays HOM05D002027 ORTHO05D017138 1.0e-21 107.5 72 100.0
Zm00001eb039060 Zea mays HOM05D000901 ORTHO05D001160 5.7e-20 101.7 83 78.3
Os02g0778500 Oryza sativa ssp. japonica HOM05D002027 ORTHO05D007928 1.3e-19 100.5 69 63.8
Zm00001eb103890 Zea mays HOM05D000901 ORTHO05D001160 6.3e-19 98.2 70 92.9
Zm00001eb256920 Zea mays HOM05D002027 ORTHO05D007928 2.4e-18 96.3 69 62.3
Zm00001eb193130 Zea mays HOM05D002027 ORTHO05D007928 4.1e-18 95.5 70 60.0
Aqoxy7G01035 Aquilegia oxysepala HOM05D002027 ORTHO05D007928 6.5e-16 88.2 71 54.9
TAR383G0615 Trochodendron aralioides HOM05D002027 ORTHO05D007928 8.5e-16 87.8 99 42.4
Sed0020055 Sechium edule HOM05D002027 ORTHO05D007928 6.1e-14 81.6 71 52.1
GSVIVG01035482001 Vitis vinifera HOM05D002027 ORTHO05D007928 6.1e-14 81.6 71 50.7
Sabra18G0046200 Salix brachista HOM05D002027 ORTHO05D007928 7.9e-14 81.3 71 50.7
Sc06g0000160 Simmondsia chinensis HOM05D002027 ORTHO05D007928 1.4e-13 80.5 104 40.4
CiPaw.16G067400 Carya illinoinensis HOM05D002027 ORTHO05D007928 2.3e-13 79.7 71 50.7
MBI19_g44268_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D007928 2.3e-13 79.7 94 39.4
TPR.G13059 Trifolium pratense HOM05D002027 ORTHO05D007928 2.3e-13 79.7 71 50.7
Dinv22945 Davidia involucrata HOM05D002027 ORTHO05D007928 3.0e-13 79.3 71 50.7
Psat6g021720 Pisum sativum HOM05D002027 ORTHO05D007928 3.9e-13 79.0 71 49.3
RcHm_v2.0_Chr6g0311981 Rosa chinensis HOM05D002027 ORTHO05D007928 3.9e-13 79.0 72 51.4
Lalb_Chr14g0366421 Lupinus albus HOM05D002027 ORTHO05D007928 6.7e-13 78.2 71 50.7
Manes.03G054000 Manihot esculenta HOM05D002027 ORTHO05D007928 6.7e-13 78.2 67 53.7
Ca_13117_v3 Cicer arietinum L. HOM05D002027 ORTHO05D007928 8.8e-13 77.8 71 50.7
Cc08_g01050 Coffea canephora HOM05D002027 ORTHO05D007928 8.8e-13 77.8 74 48.6
COL.COLO4_21153 Corchorus olitorius HOM05D002027 ORTHO05D007928 8.8e-13 77.8 70 48.6
Medtr1g015700 Medicago truncatula HOM05D002027 ORTHO05D007928 8.8e-13 77.8 71 50.7
Potri.018G048500 Populus trichocarpa HOM05D002027 ORTHO05D007928 1.1e-12 77.4 99 37.4
Thecc.09G064800 Theobroma cacao HOM05D002027 ORTHO05D007928 1.1e-12 77.4 70 47.1
Aa31LG5G9500 Aethionema arabicum HOM05D002027 ORTHO05D007016 1.5e-12 77.0 70 48.6
PSO135G0370 Papaver somniferum HOM05D002027 ORTHO05D007928 1.5e-12 77.0 99 36.4
Prupe.1G403200 Prunus persica HOM05D002027 ORTHO05D007928 1.5e-12 77.0 98 37.8
THA.LOC104803709 Tarenaya hassleriana HOM05D002027 ORTHO05D007928 1.5e-12 77.0 64 53.1
ClCG05G015810 Citrullus lanatus HOM05D002027 ORTHO05D007928 2.5e-12 76.3 99 38.4
Dinv41850 Davidia involucrata HOM05D000120 ORTHO05D000068 2.5e-12 76.3 71 46.5
FvH4_2g30870 Fragaria vesca HOM05D002027 ORTHO05D007928 2.5e-12 76.3 69 50.7
FAN24G3017 Fragaria x ananassa HOM05D002027 ORTHO05D007928 2.5e-12 76.3 69 50.7
FAN27G2495 Fragaria x ananassa HOM05D002027 ORTHO05D007928 2.5e-12 76.3 69 50.7
Glyma.14G098100 Glycine max HOM05D002027 ORTHO05D007928 2.5e-12 76.3 73 46.6
Hund25572 Selenicereus undatus HOM05D002027 ORTHO05D007928 2.5e-12 76.3 69 50.7
TAR636G2984 Trochodendron aralioides HOM05D002027 ORTHO05D007928 2.5e-12 76.3 98 35.7
MSTRG.11630 Avicennia marina HOM05D002027 ORTHO05D007928 3.3e-12 75.9 71 50.7
CANSAT25G2836 Cannabis sativa HOM05D002027 ORTHO05D007928 3.3e-12 75.9 99 37.4
CsaV3_4G036100 Cucumis sativus L. HOM05D002027 ORTHO05D007928 3.3e-12 75.9 97 39.2
FAN20G1907 Fragaria x ananassa HOM05D000120 ORTHO05D000068 3.3e-12 75.9 69 50.7
Glyma.17G226600 Glycine max HOM05D002027 ORTHO05D007928 4.3e-12 75.5 73 46.6
arahy.Tifrunner.gnm1.ann1.82L1EP Arachis hypogaea HOM05D002027 ORTHO05D007928 5.7e-12 75.1 71 49.3
Lj5g0014128 Lotus japonicus HOM05D002027 ORTHO05D007928 5.7e-12 75.1 71 50.7
Oeu022307.1 Olea europaea HOM05D002027 ORTHO05D007928 5.7e-12 75.1 69 49.3
PSO724G0582 Papaver somniferum HOM05D002027 ORTHO05D007928 5.7e-12 75.1 66 48.5
PGR004G1932 Punica granatum HOM05D002027 ORTHO05D007928 5.7e-12 75.1 99 33.3
HanXRQChr10g0309891 Helianthus annuus HOM05D002027 ORTHO05D007928 7.4e-12 74.7 68 48.5
Lsat_1_v5_gn_5_79360 Lactuca sativa HOM05D002027 ORTHO05D007928 7.4e-12 74.7 71 47.9
TAR624G0349 Trochodendron aralioides HOM05D000120 ORTHO05D007928 7.4e-12 74.7 70 48.6
ATR0598G318 Amborella trichopoda HOM05D002027 ORTHO05D007928 9.7e-12 74.3 69 49.3
arahy.Tifrunner.gnm1.ann1.AYFT4X Arachis hypogaea HOM05D002027 ORTHO05D007928 9.7e-12 74.3 71 47.9
Gohir.A06G080100 Gossypium hirsutum HOM05D002027 ORTHO05D007928 9.7e-12 74.3 68 47.1
CDE07G0566 Ceratophyllum demersum HOM05D002027 ORTHO05D002544 1.3e-11 73.9 64 51.6
Mapoly0058s0114 Marchantia polymorpha HOM05D002027 ORTHO05D007928 1.3e-11 73.9 70 45.7
Oeu024211.1 Olea europaea HOM05D002027 ORTHO05D007928 1.3e-11 73.9 69 47.8
Oeu024212.1 Olea europaea HOM05D002027 ORTHO05D007928 1.3e-11 73.9 69 47.8
Phvul.001G037700 Phaseolus vulgaris HOM05D002027 ORTHO05D007928 1.3e-11 73.9 73 46.6
TWI63G1127 Tripterygium wilfordii HOM05D002027 ORTHO05D007928 1.3e-11 73.9 67 49.3
VMungo0647G0809 Vigna mungo HOM05D002027 ORTHO05D007928 1.3e-11 73.9 73 45.2
Duzib168G1118 Durio zibethinus HOM05D002027 ORTHO05D007928 1.7e-11 73.6 103 35.0
MD08G1072900 Malus domestica HOM05D002027 ORTHO05D007928 1.7e-11 73.6 98 37.8
Potri.006G219600 Populus trichocarpa HOM05D002027 ORTHO05D007928 1.7e-11 73.6 71 46.5
Cfa017863 Carpinus fangiana HOM05D000120 ORTHO05D007928 2.2e-11 73.2 99 38.4
Gorai.001G019600 Gossypium raimondii HOM05D002027 ORTHO05D007928 2.2e-11 73.2 103 35.0
Lj7A214T27 Lonicera japonica HOM05D002027 ORTHO05D007928 2.8e-11 72.8 71 45.1
Migut.A00065 Erythranthe guttata HOM05D002027 ORTHO05D007928 3.7e-11 72.4 71 46.5
Gohir.D07G018900 Gossypium hirsutum HOM05D002027 ORTHO05D007928 3.7e-11 72.4 103 35.0
Lj7A212G30 Lonicera japonica HOM05D002027 ORTHO05D007928 3.7e-11 72.4 61 49.2
Nn6g35623 Nelumbo nucifera HOM05D002027 ORTHO05D007928 3.7e-11 72.4 103 35.0
Atru.chr7.1835 Acer truncatum HOM05D002027 ORTHO05D007928 6.3e-11 71.6 69 44.9
BcaB06g28094 Brassica carinata HOM05D002027 ORTHO05D007928 6.3e-11 71.6 68 45.6
Cpa.g.sc126.10 Carica papaya HOM05D002027 ORTHO05D007928 6.3e-11 71.6 99 34.3
AUR62020283 Chenopodium quinoa HOM05D002027 ORTHO05D007928 6.3e-11 71.6 67 49.3
MD15G1048900 Malus domestica HOM05D002027 ORTHO05D007928 6.3e-11 71.6 96 37.5
Gohir.A07G019100 Gossypium hirsutum HOM05D002027 ORTHO05D007928 8.2e-11 71.2 103 35.9
Solyc08g061480.3 Solanum lycopersicum HOM05D002027 ORTHO05D007928 8.2e-11 71.2 71 46.5
BcaC02g08291 Brassica carinata HOM05D002027 ORTHO05D007928 1.1e-10 70.9 70 44.3
A04p20340 Brassica napus HOM05D002027 ORTHO05D007928 1.1e-10 70.9 70 44.3
C04p56040 Brassica napus HOM05D002027 ORTHO05D007928 1.1e-10 70.9 70 44.3
BolC4t27137H Brassica oleracea HOM05D002027 ORTHO05D007928 1.1e-10 70.9 70 44.3
BraA04t17613Z Brassica rapa HOM05D002027 ORTHO05D007928 1.1e-10 70.9 70 44.3
AUR62037722 Chenopodium quinoa HOM05D002027 ORTHO05D007928 1.1e-10 70.9 67 49.3
MELO3C016918.2 Cucumis melo HOM05D002027 ORTHO05D007928 1.1e-10 70.9 101 37.6
Sp4g06660 Schrenkiella parvula HOM05D002027 ORTHO05D007928 1.1e-10 70.9 70 44.3
Gohir.D06G079600 Gossypium hirsutum HOM05D002027 ORTHO05D007928 1.4e-10 70.5 68 44.1
Gorai.010G092800 Gossypium raimondii HOM05D002027 ORTHO05D007928 1.4e-10 70.5 68 44.1
Nitab4.5_0006220g0040 Nicotiana tabacum HOM05D002027 ORTHO05D007928 1.4e-10 70.5 71 46.5
Sabra06G0169500 Salix brachista HOM05D002027 ORTHO05D007928 1.4e-10 70.5 99 35.4
SalBow4G1403 Salvia bowleyana HOM05D002027 ORTHO05D007928 1.4e-10 70.5 73 46.6
Sopen08g016820 Solanum pennellii HOM05D002027 ORTHO05D007928 1.4e-10 70.5 71 46.5
PGSC0003DMG400024394 Solanum tuberosum HOM05D002027 ORTHO05D007928 1.4e-10 70.5 71 46.5
SGA_v2.0_scaffold20G09151 Striga asiatica HOM05D002027 ORTHO05D007928 1.4e-10 70.5 71 46.5
MBI19_g43890_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D007928 1.8e-10 70.1 94 37.2
TWI34G0836 Tripterygium wilfordii HOM05D002027 ORTHO05D007928 1.8e-10 70.1 65 50.8
DCAR_003721 Daucus carota HOM05D002027 ORTHO05D007928 2.4e-10 69.7 71 43.7
Peaxi162Scf00486g00315 Petunia axillaris HOM05D002027 ORTHO05D007928 2.4e-10 69.7 71 45.1
Carub.0004s0620 Capsella rubella HOM05D002027 ORTHO05D007928 3.1e-10 69.3 70 42.9
unitig_748.g7540 Utricularia gibba HOM05D002027 ORTHO05D007928 3.1e-10 69.3 71 43.7
HPP92_009227 Vanilla planifolia HOM05D002027 ORTHO05D007928 3.1e-10 69.3 61 54.1
AL4G18930 Arabidopsis lyrata HOM05D002027 ORTHO05D007928 4.1e-10 68.9 67 46.3
AT2G26310 Arabidopsis thaliana HOM05D002027 ORTHO05D007928 4.1e-10 68.9 67 46.3
ECA234G4199 Erigeron canadensis HOM05D002027 ORTHO05D007928 4.1e-10 68.9 71 43.7
Eucgr.C00737 Eucalyptus grandis HOM05D002027 ORTHO05D007928 4.1e-10 68.9 71 40.8
Nn8g38643 Nelumbo nucifera HOM05D002027 ORTHO05D007928 4.1e-10 68.9 99 36.4
Actinidia25687 Actinidia chinensis HOM05D002027 ORTHO05D007928 5.3e-10 68.6 99 35.4
CARHR115240 Cardamine hirsuta HOM05D002027 ORTHO05D007928 5.3e-10 68.6 70 42.9
Ciclev10008420m.g Citrus clementina HOM05D002027 ORTHO05D007928 5.3e-10 68.6 71 43.7
Nitab4.5_0001576g0010 Nicotiana tabacum HOM05D002027 ORTHO05D007928 5.3e-10 68.6 71 45.1
Haze_18309 Corylus avellana HOM05D002027 ORTHO05D007928 1.2e-09 67.4 99 36.4
Ah.12g061280 Amaranthus hybridus HOM05D002027 ORTHO05D007928 2.6e-09 66.2 65 46.2
EL10Ac2g02409 Beta vulgaris HOM05D002027 ORTHO05D007928 3.4e-09 65.9 61 47.5
Rhsim06G0100500 Rhododendron simsii HOM05D002027 ORTHO05D007928 4.5e-09 65.5 97 33.0
Pp3c21_9340 Physcomitrium patens HOM05D002027 ORTHO05D007928 1.7e-08 63.5 71 40.8
vmacro12513 Vaccinium macrocarpon HOM05D002027 ORTHO05D007928 2.9e-08 62.8 62 45.2
Os09g0542000 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D001160 5.0e-08 62.0 70 68.6
SMO200G0139 Selaginella moellendorffii HOM05D002027 ORTHO05D007928 5.0e-08 62.0 60 45.0
DCAR_001241 Daucus carota HOM05D002027 ORTHO05D007928 3.2e-07 59.3 61 42.6
ATR0332G016 Amborella trichopoda HOM05D002027 ORTHO05D004229 4.2e-07 58.9 58 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2504 Anthoceros agrestis HOM05D002027 ORTHO05D004229 7.2e-07 58.2 58 43.1
CBR_g20428 Chara braunii HOM05D002027 ORTHO05D007928 9.4e-07 57.8 59 42.4
SEGI_03719 Sequoiadendron giganteum HOM05D002027 ORTHO05D007928 9.4e-07 57.8 70 35.7
Zm00001eb015640 Zea mays HOM05D000901 ORTHO05D001160 3.6e-06 55.8 26 96.2
SEGI_28474 Sequoiadendron giganteum HOM05D002027 ORTHO05D004229 6.1e-06 55.1 58 39.7
Aqoxy2G03366 Aquilegia oxysepala HOM05D002027 ORTHO05D004229 7.9e-06 54.7 60 36.7
MBI04_g29619_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D004229 7.9e-06 54.7 58 37.9
TAR365G0988 Trochodendron aralioides HOM05D002027 ORTHO05D004229 7.9e-06 54.7 60 40.0


User provided reference genes

Program Settings