Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 6.2e-97 357.5 180 100.0
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 1.2e-71 273.5 166 85.5
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 9.7e-58 227.3 138 83.3
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 4.5e-55 218.4 154 72.7
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 5.9e-55 218.0 154 72.7
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 1.7e-54 216.5 114 91.2
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 2.2e-54 216.1 114 90.4
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.9e-54 215.7 159 71.7
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 5.0e-54 214.9 114 90.4
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 1.1e-53 213.8 164 71.3
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 1.1e-53 213.8 158 69.6
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.5e-53 212.6 159 70.4
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 4.2e-53 211.8 114 88.6
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 4.2e-53 211.8 159 69.8
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 4.2e-53 211.8 160 68.8
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 5.5e-53 211.5 159 69.2
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 5.5e-53 211.5 114 86.0
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 9.4e-53 210.7 151 71.5
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 9.4e-53 210.7 162 68.5
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 1.2e-52 210.3 168 67.3
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 1.2e-52 210.3 161 68.9
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 1.6e-52 209.9 152 70.4
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 2.1e-52 209.5 183 62.3
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 2.1e-52 209.5 152 71.1
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 2.7e-52 209.1 114 86.8
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 3.6e-52 208.8 114 86.8
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 3.6e-52 208.8 166 66.3
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 3.6e-52 208.8 153 68.6
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 3.6e-52 208.8 116 85.3
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 4.7e-52 208.4 114 86.0
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 4.7e-52 208.4 133 77.4
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 4.7e-52 208.4 132 75.8
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 4.7e-52 208.4 131 77.1
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 4.7e-52 208.4 144 72.9
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 7.9e-52 207.6 113 86.7
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 7.9e-52 207.6 176 63.6
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 7.9e-52 207.6 153 71.9
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 7.9e-52 207.6 153 71.9
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 1.0e-51 207.2 125 80.0
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 1.0e-51 207.2 125 80.0
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 1.0e-51 207.2 154 70.1
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.8e-51 206.5 154 70.1
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 2.3e-51 206.1 143 72.7
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 2.3e-51 206.1 143 72.7
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 2.3e-51 206.1 114 86.0
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 3.0e-51 205.7 168 66.1
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 3.9e-51 205.3 158 66.5
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 5.2e-51 204.9 137 74.5
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 5.2e-51 204.9 114 85.1
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 6.7e-51 204.5 126 77.8
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 6.7e-51 204.5 137 74.5
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 6.7e-51 204.5 184 62.0
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 6.7e-51 204.5 178 61.8
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 8.8e-51 204.1 134 75.4
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 1.1e-50 203.8 114 84.2
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 1.1e-50 203.8 114 84.2
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 1.1e-50 203.8 155 69.0
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 1.5e-50 203.4 170 61.8
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 2.0e-50 203.0 134 76.9
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 2.6e-50 202.6 114 83.3
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.6e-50 202.6 114 83.3
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.6e-50 202.6 114 83.3
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 2.6e-50 202.6 114 84.2
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 3.3e-50 202.2 144 71.5
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 3.3e-50 202.2 153 68.6
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 3.3e-50 202.2 114 84.2
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 3.3e-50 202.2 134 76.1
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 4.4e-50 201.8 114 83.3
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 4.4e-50 201.8 172 59.9
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 5.7e-50 201.4 114 82.5
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 5.7e-50 201.4 150 67.3
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 5.7e-50 201.4 155 69.0
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 5.7e-50 201.4 114 83.3
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 5.7e-50 201.4 126 77.0
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.3e-49 200.3 140 71.4
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 1.3e-49 200.3 131 74.8
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.3e-49 200.3 129 76.0
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 1.7e-49 199.9 184 60.3
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 2.2e-49 199.5 124 77.4
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 3.7e-49 198.7 114 84.2
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 6.3e-49 198.0 158 63.3
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 1.4e-48 196.8 178 59.0
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 1.8e-48 196.4 114 78.9
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.8e-48 196.4 133 72.2
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 2.4e-48 196.1 113 79.6
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 2.4e-48 196.1 155 66.5
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 2.4e-48 196.1 155 66.5
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 3.1e-48 195.7 114 80.7
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 5.3e-48 194.9 114 77.2
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 9.1e-48 194.1 163 62.0
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 9.1e-48 194.1 113 79.6
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.6e-47 193.4 152 65.1
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 2.6e-47 192.6 162 59.9
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 3.5e-47 192.2 161 62.1
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 3.5e-47 192.2 113 79.6
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 5.9e-47 191.4 115 79.1
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 1.3e-46 190.3 131 67.9
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 1.7e-46 189.9 165 60.6
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 1.7e-46 189.9 162 59.9
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 5.0e-46 188.3 161 58.4
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 6.5e-46 188.0 126 69.0
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 8.5e-46 187.6 170 59.4
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 1.9e-45 186.4 131 66.4
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 1.9e-45 186.4 131 65.6
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 2.5e-45 186.0 133 66.2
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 4.2e-45 185.3 130 67.7
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 4.2e-45 185.3 130 67.7
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 5.5e-45 184.9 131 65.6
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 5.5e-45 184.9 131 71.0
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 2.7e-44 182.6 117 74.4
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 1.4e-43 180.3 153 61.4
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 8.8e-43 177.6 156 58.3
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 9.7e-42 174.1 114 72.8
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 1.3e-41 173.7 111 73.0
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 2.8e-41 172.6 119 65.5
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.6e-39 166.8 119 63.0
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 3.6e-36 155.6 115 60.9
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 1.2e-34 150.6 136 54.4
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 3.1e-32 142.5 117 56.4
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 5.4e-32 141.7 111 56.8
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 1.0e-30 137.5 107 62.6
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 1.0e-30 137.5 113 64.6
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 2.6e-26 122.9 59 100.0
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 2.6e-26 122.9 59 100.0
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 5.2e-19 98.6 143 45.5
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 1.2e-18 97.4 51 94.1
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.1e-16 90.9 70 65.7
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 4.7e-12 75.5 39 89.7
Zm00001eb141800 Zea mays HOM05D042765 ORTHO05D444121 7.5e-10 68.2 136 39.0
Zm00001eb141840 Zea mays HOM05D042765 ORTHO05D443703 7.5e-10 68.2 136 38.2
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 2.9e-09 66.2 75 53.3


User provided reference genes

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