Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 2.2e-66 255.8 155 100.0
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 3.8e-50 201.8 144 85.4
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 1.3e-37 160.2 104 86.5
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 6.0e-32 141.4 104 75.0
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.0e-31 140.6 111 71.2
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 1.8e-31 139.8 104 74.0
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.8e-31 139.8 104 74.0
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 3.0e-31 139.0 106 71.7
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 6.7e-31 137.9 110 70.0
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 8.7e-31 137.5 104 73.1
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 8.7e-31 137.5 104 72.1
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 1.9e-30 136.3 104 70.2
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 2.5e-30 136.0 105 71.4
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 3.3e-30 135.6 109 69.7
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 4.3e-30 135.2 104 70.2
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 5.6e-30 134.8 104 71.2
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 7.4e-30 134.4 106 70.8
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 7.4e-30 134.4 105 69.5
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 1.3e-29 133.7 105 70.5
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 1.6e-29 133.3 104 69.2
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 1.6e-29 133.3 104 71.2
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 2.1e-29 132.9 114 65.8
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 2.1e-29 132.9 107 70.1
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 2.8e-29 132.5 104 71.2
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 2.8e-29 132.5 104 71.2
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 3.7e-29 132.1 105 68.6
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 4.8e-29 131.7 106 67.9
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 4.8e-29 131.7 106 67.9
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 6.2e-29 131.3 104 68.3
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 8.1e-29 131.0 104 68.3
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 8.1e-29 131.0 104 69.2
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 8.1e-29 131.0 106 67.0
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 8.1e-29 131.0 104 68.3
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 1.1e-28 130.6 104 68.3
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.1e-28 130.6 104 67.3
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.1e-28 130.6 104 67.3
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.4e-28 130.2 106 67.0
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 1.4e-28 130.2 104 68.3
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 1.8e-28 129.8 104 67.3
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 1.8e-28 129.8 114 64.0
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 1.8e-28 129.8 104 67.3
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 1.8e-28 129.8 104 68.3
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 1.8e-28 129.8 106 67.9
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 2.4e-28 129.4 104 70.2
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 2.4e-28 129.4 104 68.3
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.4e-28 129.4 104 66.3
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 2.4e-28 129.4 104 66.3
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 2.4e-28 129.4 108 66.7
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 3.1e-28 129.0 106 66.0
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 3.1e-28 129.0 106 69.8
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 3.1e-28 129.0 106 69.8
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 4.0e-28 128.6 104 66.3
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 5.3e-28 128.3 104 69.2
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 5.3e-28 128.3 104 67.3
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 6.9e-28 127.9 106 68.9
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 6.9e-28 127.9 116 63.8
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 9.0e-28 127.5 104 68.3
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 9.0e-28 127.5 104 68.3
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 9.0e-28 127.5 104 67.3
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 1.2e-27 127.1 106 66.0
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 1.2e-27 127.1 106 65.1
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 1.2e-27 127.1 106 66.0
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 1.2e-27 127.1 106 66.0
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 1.2e-27 127.1 108 66.7
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 1.2e-27 127.1 104 66.3
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 1.5e-27 126.7 106 66.0
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 2.0e-27 126.3 106 66.0
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.0e-27 126.3 104 67.3
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 2.6e-27 125.9 106 65.1
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 3.4e-27 125.6 104 67.3
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 3.4e-27 125.6 104 67.3
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 3.4e-27 125.6 106 65.1
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 3.4e-27 125.6 107 62.6
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 4.5e-27 125.2 106 65.1
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 4.5e-27 125.2 104 66.3
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 4.5e-27 125.2 104 66.3
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 5.8e-27 124.8 106 64.2
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 5.8e-27 124.8 106 65.1
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 5.8e-27 124.8 110 64.5
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 5.8e-27 124.8 105 63.8
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.8e-27 124.8 104 66.3
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.8e-27 124.8 104 66.3
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 7.6e-27 124.4 106 63.2
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 1.0e-26 124.0 103 66.0
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 1.3e-26 123.6 106 64.2
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 2.2e-26 122.9 106 63.2
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 2.2e-26 122.9 103 68.0
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 4.9e-26 121.7 104 63.5
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 4.9e-26 121.7 90 73.3
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 6.5e-26 121.3 108 63.0
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 8.4e-26 120.9 109 63.3
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 8.4e-26 120.9 127 59.1
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 1.9e-25 119.8 101 65.3
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 2.5e-25 119.4 104 63.5
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 4.2e-25 118.6 106 62.3
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 4.2e-25 118.6 111 58.6
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 1.2e-24 117.1 93 66.7
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 2.1e-24 116.3 89 70.8
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 3.5e-24 115.5 91 69.2
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 7.9e-24 114.4 130 54.6
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 1.8e-23 113.2 93 66.7
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 2.3e-23 112.8 103 64.1
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 3.0e-23 112.5 92 67.4
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 5.1e-23 111.7 90 67.8
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 6.7e-23 111.3 93 66.7
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 4.8e-21 105.1 90 66.7
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 6.2e-21 104.8 85 64.7
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 6.2e-21 104.8 110 50.9
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.4e-20 103.6 103 58.3
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 2.4e-20 102.8 145 45.5
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 5.3e-20 101.7 105 59.0
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 9.0e-20 100.9 79 68.4
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 4.5e-19 98.6 104 53.8
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 5.8e-19 98.2 108 58.3
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.7e-18 96.7 78 64.1
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 1.7e-18 96.7 78 64.1
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 5.0e-18 95.1 104 52.9
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 2.7e-16 89.4 110 45.5
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 1.8e-15 86.7 66 68.2
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 3.7e-13 79.0 105 50.5
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 5.0e-10 68.6 56 71.4
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 1.6e-08 63.5 46 67.4
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 3.0e-07 59.3 46 58.7
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 4.3e-06 55.5 46 56.5
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 5.7e-06 55.1 46 71.7


User provided reference genes

Program Settings