Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 6.9e-162 573.9 296 100.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.6e-134 483.0 294 85.7
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 6.0e-113 411.4 274 77.7
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 8.1e-102 374.4 209 92.8
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.1e-85 320.9 231 76.2
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 5.3e-85 318.5 212 83.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 9.3e-66 254.6 179 76.0
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.1e-65 253.4 171 76.6
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.4e-53 213.4 276 48.2
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.1e-47 194.5 109 94.5
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.1e-47 194.5 109 94.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.1e-47 194.5 109 94.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.1e-47 194.5 109 94.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.1e-47 194.5 109 94.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.1e-47 194.5 109 94.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 9.7e-47 191.4 103 96.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 4.7e-25 119.4 243 36.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.0e-24 118.2 215 37.7
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.0e-24 118.2 217 38.7
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.4e-24 117.9 260 36.5
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 5.2e-24 115.9 260 36.9
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.6e-23 113.6 213 38.5
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 9.8e-23 111.7 215 39.5
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.3e-22 111.3 230 36.1
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.3e-22 111.3 264 35.6
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.2e-22 110.5 308 32.1
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.7e-22 109.8 212 38.2
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.7e-22 109.8 212 38.2
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 4.8e-22 109.4 211 38.4
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 8.3e-22 108.6 293 35.5
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.8e-21 107.5 269 35.7
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.1e-21 106.7 212 38.2
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 3.1e-21 106.7 211 38.9
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 5.4e-21 105.9 231 39.8
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.2e-20 104.8 215 37.2
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-20 104.8 212 37.3
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.6e-20 104.4 212 37.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 2.0e-20 104.0 212 37.7
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.7e-20 103.6 230 40.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 4.5e-20 102.8 279 33.3
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 4.5e-20 102.8 282 31.9
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.7e-20 102.1 226 33.6
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 7.7e-20 102.1 215 38.6
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.7e-19 100.9 244 33.6
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 2.9e-19 100.1 264 32.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.8e-19 99.8 209 35.4
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 6.5e-19 99.0 259 32.8
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.1e-18 98.2 217 38.2
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.9e-18 97.4 310 29.4
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.9e-18 97.4 232 34.9
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.5e-18 97.1 250 34.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 5.5e-18 95.9 210 37.6
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 9.5e-18 95.1 215 36.3
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 9.5e-18 95.1 233 33.0
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.2e-17 94.7 226 34.1
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.2e-17 94.7 258 32.9
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.6e-17 94.4 224 32.6
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.1e-17 94.0 233 33.5
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.8e-17 93.6 279 31.2
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 8.0e-17 92.0 241 33.2
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 8.0e-17 92.0 227 37.9
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.0e-16 91.7 309 32.4
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.4e-16 91.3 209 37.3
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.8e-16 90.9 210 34.8
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 2.3e-16 90.5 196 37.2
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.3e-16 90.5 281 30.6
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 3.0e-16 90.1 284 31.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.2e-15 88.2 234 30.3
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 2.0e-15 87.4 210 36.7
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.0e-15 87.4 304 29.9
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.0e-15 87.4 304 29.9
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 2.6e-15 87.0 327 29.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 3.4e-15 86.7 222 32.9
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.4e-15 86.7 234 30.8
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 4.4e-15 86.3 207 36.2
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 7.5e-15 85.5 235 36.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 9.8e-15 85.1 211 33.6
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 9.8e-15 85.1 211 33.6
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 9.8e-15 85.1 308 29.9
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.2e-14 84.0 221 37.6
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 3.7e-14 83.2 212 35.4
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.7e-14 83.2 255 32.5
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.9e-14 82.8 260 31.2
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 6.3e-14 82.4 299 31.4
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 6.3e-14 82.4 245 34.3
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 6.3e-14 82.4 231 33.8
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 8.3e-14 82.0 240 32.5
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.4e-13 81.3 224 31.7
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.4e-13 81.3 243 35.0
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.8e-13 80.9 206 32.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.8e-13 80.9 209 33.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.8e-13 80.9 225 32.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 9.2e-13 78.6 210 34.3
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.2e-12 78.2 212 34.0
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.6e-12 77.8 215 37.2
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 3.5e-12 76.6 295 28.1
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 3.5e-12 76.6 261 30.3
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 5.9e-12 75.9 229 30.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 7.8e-12 75.5 204 32.8
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.0e-11 75.1 300 28.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.3e-11 74.7 261 29.5
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.7e-11 74.3 206 32.0
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.7e-11 74.3 206 32.0
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.7e-11 74.3 206 32.0
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 2.9e-11 73.6 264 29.2
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.9e-11 73.6 214 31.8
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 8.6e-11 72.0 207 30.9
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 8.6e-11 72.0 220 31.4
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.1e-10 71.6 317 26.8
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 5.6e-10 69.3 213 32.4
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.2e-09 68.2 206 32.5
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.2e-09 68.2 206 32.5
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.6e-09 67.8 211 31.8
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 2.1e-09 67.4 183 31.7
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 6.1e-09 65.9 250 28.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 8.0e-09 65.5 275 27.3
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.4e-08 64.7 55 60.0
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.4e-07 60.1 217 30.0
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 7.5e-07 58.9 284 26.1
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.7e-06 57.8 259 25.1
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.2e-06 57.4 205 34.6
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 8.3e-06 55.5 233 28.8


User provided reference genes

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