Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 2.7e-120 435.3 210 100.0
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 4.2e-113 411.4 210 93.3
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.4e-70 268.5 209 62.2
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.4e-70 268.5 209 62.2
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 6.8e-63 244.6 209 58.4
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.0e-62 243.0 209 59.3
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 3.4e-62 242.3 209 58.4
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 7.6e-62 241.1 210 57.6
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-61 240.0 209 58.4
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.4e-60 235.0 209 56.9
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.9e-50 202.2 209 53.6
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-44 183.7 175 54.3
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.1e-39 166.0 202 44.1
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 5.3e-39 165.2 173 48.6
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 2.0e-38 163.3 203 43.3
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.0e-37 161.0 203 42.9
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.9e-37 159.5 202 42.1
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.8e-37 159.1 209 43.1
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.8e-37 159.1 207 41.1
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.4e-37 157.9 205 43.4
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-36 157.5 205 41.0
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 3.5e-35 152.5 206 41.3
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-34 150.6 203 39.9
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 5.1e-34 148.7 194 39.7
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 1.1e-33 147.5 208 41.3
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 5.7e-33 145.2 206 40.8
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 2.8e-32 142.9 207 39.6
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 3.7e-32 142.5 207 36.7
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.8e-32 142.1 206 39.3
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.2e-32 141.7 205 41.5
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.4e-31 140.6 209 41.6
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.4e-31 139.8 146 47.9
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 3.1e-31 139.4 177 42.4
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.0e-31 137.9 187 43.9
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.5e-30 137.1 175 41.1
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.5e-30 137.1 175 41.1
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 2.6e-30 136.3 208 40.4
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 2.6e-30 136.3 202 40.6
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 2.6e-30 136.3 202 40.6
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 7.6e-30 134.8 207 41.1
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 1.7e-29 133.7 206 38.8
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.7e-29 133.7 178 41.0
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 6.5e-29 131.7 177 41.2
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 3.2e-28 129.4 209 36.4
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 4.2e-28 129.0 183 41.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 4.2e-28 129.0 199 39.7
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 4.2e-28 129.0 199 39.7
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.2e-27 127.5 199 39.7
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-26 124.0 103 53.4
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.8e-26 123.6 204 38.7
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-26 123.6 178 41.0
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.3e-26 123.2 206 36.4
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.3e-26 123.2 206 36.4
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 5.1e-26 122.1 177 40.1
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 8.7e-26 121.3 208 37.5
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 8.7e-26 121.3 142 44.4
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 8.7e-26 121.3 142 44.4
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.5e-25 120.6 130 47.7
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.5e-25 120.6 153 41.2
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-25 120.2 130 47.7
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-25 120.2 198 36.9
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.5e-25 119.8 140 42.9
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 3.3e-25 119.4 130 47.7
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.3e-25 119.0 204 35.8
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 5.7e-25 118.6 130 46.2
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 9.7e-25 117.9 187 39.6
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-24 117.5 136 43.4
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.6e-24 117.1 103 50.5
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 3.7e-24 115.9 160 40.6
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 4.8e-24 115.5 174 39.7
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.8e-24 115.5 198 35.9
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.1e-23 114.4 188 36.7
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-23 114.0 127 44.9
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-23 114.0 127 44.9
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-23 114.0 180 38.3
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 2.4e-23 113.2 179 36.9
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 4.1e-23 112.5 142 42.3
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 5.3e-23 112.1 141 40.4
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.0e-21 107.8 161 37.9
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 2.9e-21 106.3 213 33.8
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-20 104.4 183 37.2
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 1.9e-20 103.6 172 39.0
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 3.2e-20 102.8 199 34.2
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 7.2e-20 101.7 139 41.7
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.4e-20 101.3 215 30.7
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-19 100.1 161 39.8
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-19 100.1 169 39.1
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 6.1e-19 98.6 178 36.5
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.1e-19 98.6 180 35.6
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-19 98.2 178 36.0
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.7e-18 95.1 180 36.7
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.8e-18 94.7 182 35.2
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.1e-17 94.4 143 39.2
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 2.5e-17 93.2 213 28.2
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 4.3e-17 92.4 181 36.5
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 5.7e-17 92.0 213 29.1
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 5.7e-17 92.0 181 36.5
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.2e-16 90.1 95 48.4
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-16 89.7 206 31.1
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.7e-16 89.4 189 33.3
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.7e-16 89.4 174 32.2
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.3e-16 88.6 117 37.6
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.1e-15 87.8 131 41.2
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.1e-15 87.8 181 35.4
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-15 87.4 169 29.6
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 1.4e-15 87.4 187 34.2
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 6.9e-15 85.1 69 53.6
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-14 84.3 178 33.7
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.6e-14 83.2 218 30.7
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 4.5e-14 82.4 185 30.8
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.9e-13 79.7 204 29.4
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 8.5e-13 78.2 181 34.8
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.4e-12 77.4 184 34.8
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-12 77.0 159 29.6
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.2e-11 74.3 209 33.0
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-11 74.3 139 33.8
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-11 73.6 181 34.3
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.7e-11 73.2 180 32.8
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 6.1e-11 72.0 134 35.8
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-10 70.9 189 31.7
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-10 70.9 189 31.7
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 6.7e-10 68.6 188 30.9
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-09 67.8 144 31.2
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 1.5e-09 67.4 155 31.6
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.6e-09 66.6 186 29.6
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.7e-09 65.5 204 28.4
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.7e-09 65.5 128 36.7
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 7.4e-09 65.1 186 31.7
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.4e-09 65.1 109 37.6
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.7e-08 62.8 142 28.9
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 8.2e-08 61.6 84 38.1
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-07 60.8 87 39.1
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.4e-07 60.8 135 31.1
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 2.6e-06 56.6 215 25.1
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 4.5e-06 55.8 132 32.6


User provided reference genes

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