Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 4.8e-134 481.1 233 100.0
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 3.1e-125 451.8 233 93.1
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.6e-68 261.9 225 56.4
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 7.3e-66 254.6 225 54.7
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 1.3e-65 253.8 237 52.3
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.6e-65 253.4 225 55.1
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 3.6e-65 252.3 235 53.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.8e-64 250.0 222 56.8
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.8e-64 250.0 222 56.8
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.4e-64 249.6 224 52.7
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 3.1e-64 249.2 239 53.1
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 3.1e-64 249.2 226 55.3
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.3e-64 248.4 233 54.1
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.6e-63 246.1 229 52.4
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.6e-63 246.1 224 52.7
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 2.6e-63 246.1 224 53.6
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.6e-63 246.1 199 58.3
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.4e-63 245.7 238 50.8
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 3.4e-63 245.7 199 58.8
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.4e-63 245.7 211 55.9
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 5.8e-63 245.0 224 54.5
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 9.9e-63 244.2 222 55.4
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 9.9e-63 244.2 225 54.2
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.3e-62 243.8 205 55.6
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.3e-62 243.8 222 52.7
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.9e-62 242.7 199 58.3
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.8e-62 242.3 219 54.8
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 3.8e-62 242.3 224 53.6
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 4.9e-62 241.9 216 55.6
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.9e-62 241.9 199 58.8
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 4.9e-62 241.9 202 58.4
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 6.4e-62 241.5 225 53.3
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 8.4e-62 241.1 225 52.4
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.4e-61 240.4 209 57.9
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.2e-61 239.2 219 54.8
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.2e-61 239.2 199 58.3
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 4.2e-61 238.8 224 52.2
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 4.2e-61 238.8 224 52.2
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.4e-61 238.4 224 52.7
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.1e-61 238.0 209 57.4
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 7.1e-61 238.0 224 53.1
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 9.3e-61 237.7 226 52.2
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.3e-61 237.7 198 57.6
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 9.3e-61 237.7 224 52.2
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 9.3e-61 237.7 226 52.2
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.2e-60 237.3 231 51.5
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.2e-60 237.3 199 57.3
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.2e-60 237.3 224 52.2
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.6e-60 236.9 225 53.8
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.6e-60 236.9 232 50.9
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.6e-60 236.9 232 50.9
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.1e-60 236.5 198 57.1
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 2.7e-60 236.1 199 56.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 3.5e-60 235.7 199 55.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 3.5e-60 235.7 209 54.5
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 4.6e-60 235.3 208 55.3
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 4.6e-60 235.3 230 52.2
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 4.6e-60 235.3 194 56.7
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.0e-60 235.0 209 56.9
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 6.0e-60 235.0 200 56.0
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 6.0e-60 235.0 194 57.7
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 6.0e-60 235.0 208 54.3
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 7.9e-60 234.6 220 53.2
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 7.9e-60 234.6 196 56.6
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.0e-59 234.2 223 52.0
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.0e-59 234.2 199 57.3
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.8e-59 233.4 227 52.9
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.8e-59 233.4 225 52.9
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.8e-59 233.4 193 57.0
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.8e-59 233.4 226 50.4
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.3e-59 233.0 220 52.7
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 3.0e-59 232.6 197 56.9
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 3.9e-59 232.3 194 58.2
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.9e-59 232.3 237 48.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 5.1e-59 231.9 222 49.1
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 6.7e-59 231.5 199 56.8
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 8.7e-59 231.1 223 51.1
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 8.7e-59 231.1 196 56.1
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 8.7e-59 231.1 222 49.5
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.5e-58 230.3 199 55.3
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.5e-58 230.3 230 49.6
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 2.5e-58 229.6 199 55.8
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 2.5e-58 229.6 229 48.9
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 3.3e-58 229.2 198 53.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 7.4e-58 228.0 194 55.2
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 7.4e-58 228.0 226 50.4
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.6e-57 226.9 226 50.4
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 8.1e-57 224.6 202 54.5
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.4e-56 223.8 200 55.0
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 2.4e-56 223.0 200 54.5
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 9.0e-56 221.1 199 53.8
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 3.4e-55 219.2 223 50.7
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.7e-54 216.9 217 49.8
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.2e-54 216.5 172 59.9
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.2e-54 216.5 222 48.6
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.1e-53 214.2 205 48.8
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.1e-53 214.2 205 48.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.9e-53 213.4 203 51.2
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 3.2e-53 212.6 221 45.7
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 5.5e-53 211.8 205 48.3
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 5.5e-53 211.8 205 48.3
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 5.5e-53 211.8 205 48.3
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 7.1e-53 211.5 209 47.4
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 7.1e-53 211.5 219 46.6
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-52 209.9 211 46.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 2.1e-52 209.9 208 48.6
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.1e-52 209.9 227 46.3
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.7e-52 209.5 181 56.4
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 6.0e-52 208.4 203 48.8
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.1e-50 204.1 219 45.2
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.9e-50 203.4 217 47.0
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 4.3e-50 202.2 222 45.0
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 5.6e-50 201.8 220 45.9
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.5e-47 193.7 182 48.9
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 4.5e-47 192.2 204 46.1
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 3.2e-45 186.0 201 47.8
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 6.0e-44 181.8 136 60.3
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 7.9e-44 181.4 245 42.4
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 5.1e-43 178.7 226 44.7
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 1.9e-42 176.8 233 44.2
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.7e-42 175.3 146 57.5
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.7e-41 172.6 153 52.9
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 3.8e-38 162.5 84 85.7
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.1e-34 151.0 202 40.1
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 9.1e-32 141.4 212 38.2
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 6.5e-30 135.2 248 35.5
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 6.5e-30 135.2 182 44.5
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.3e-27 126.7 143 44.8
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.0e-19 99.8 174 34.5
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 8.8e-19 98.2 96 52.1
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.7e-17 94.0 190 34.2
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.8e-08 63.9 199 28.1
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 8.5e-06 55.1 48 54.2


User provided reference genes

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