Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 5.7e-160 567.8 342 100.0
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 3.4e-128 462.2 346 80.3
Os12g0577200 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 3.3e-107 392.5 349 73.1
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 2.6e-51 206.8 307 45.0
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 8.3e-50 201.8 322 44.4
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 8.3e-50 201.8 306 45.8
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 1.4e-49 201.1 308 45.1
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 4.1e-49 199.5 306 43.8
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 7.0e-49 198.7 308 44.5
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 9.2e-49 198.4 308 45.1
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 3.5e-48 196.4 316 42.7
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 1.3e-47 194.5 306 44.1
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 1.3e-47 194.5 315 42.2
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 1.7e-47 194.1 317 42.3
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 8.6e-47 191.8 325 43.1
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 1.5e-46 191.0 315 41.9
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 1.5e-46 191.0 315 41.9
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 4.3e-46 189.5 304 43.4
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 5.6e-46 189.1 303 42.9
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 1.2e-45 188.0 310 41.3
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 6.1e-45 185.7 306 40.2
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 1.0e-44 184.9 308 41.9
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 1.8e-44 184.1 304 40.5
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 4.0e-44 183.0 304 43.4
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 4.0e-44 183.0 278 45.0
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 1.5e-43 181.0 303 42.2
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 2.0e-43 180.6 315 39.7
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 2.0e-43 180.6 305 42.3
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 5.8e-43 179.1 307 41.4
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 5.8e-43 179.1 314 41.1
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 1.7e-42 177.6 303 41.3
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 2.2e-42 177.2 322 40.1
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 2.9e-42 176.8 307 40.7
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 2.9e-42 176.8 317 39.7
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 4.9e-42 176.0 307 41.0
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 4.9e-42 176.0 306 39.9
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 6.4e-42 175.6 307 39.7
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 2.4e-41 173.7 302 41.4
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 3.2e-41 173.3 320 40.6
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 4.1e-41 172.9 307 40.7
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 4.1e-41 172.9 303 40.6
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 9.2e-41 171.8 301 41.2
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.2e-40 171.4 309 39.2
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 1.2e-40 171.4 303 40.9
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 1.6e-40 171.0 323 40.6
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 2.0e-40 170.6 305 42.3
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 2.0e-40 170.6 325 40.0
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 2.7e-40 170.2 325 40.6
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 2.7e-40 170.2 302 39.4
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 6.0e-40 169.1 310 39.4
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 7.8e-40 168.7 304 41.1
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.0e-39 168.3 307 40.1
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 1.0e-39 168.3 303 40.3
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 1.0e-39 168.3 303 39.9
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 1.3e-39 167.9 307 40.1
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 3.0e-39 166.8 307 39.1
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 3.0e-39 166.8 270 44.8
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 3.9e-39 166.4 304 39.1
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 8.6e-39 165.2 304 38.8
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 8.6e-39 165.2 308 41.2
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 1.5e-38 164.5 293 42.0
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 1.5e-38 164.5 308 42.2
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.5e-38 163.7 307 39.4
Zm00001eb264770 Zea mays HOM05D004089 ORTHO05D004687 2.5e-38 163.7 329 43.8
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 5.6e-38 162.5 304 41.1
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 9.5e-38 161.8 303 38.9
Os12g0507400 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 9.5e-38 161.8 337 43.0
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 9.5e-38 161.8 314 38.5
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 2.1e-37 160.6 305 40.0
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 3.6e-37 159.8 305 39.3
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 3.6e-37 159.8 306 37.9
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 4.7e-37 159.5 308 40.9
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 8.0e-37 158.7 301 38.9
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 1.1e-36 158.3 304 37.5
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 1.4e-36 157.9 305 37.4
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 2.3e-36 157.1 304 37.8
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 4.0e-36 156.4 302 37.7
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 5.2e-36 156.0 304 36.5
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 6.8e-36 155.6 306 40.2
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 1.5e-35 154.5 305 40.0
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 1.5e-35 154.5 308 39.6
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 2.0e-35 154.1 317 37.2
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 2.0e-35 154.1 314 36.6
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 3.4e-35 153.3 308 37.7
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 5.8e-35 152.5 330 35.2
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 7.5e-35 152.1 308 38.6
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 7.5e-35 152.1 302 37.7
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 9.8e-35 151.8 308 38.6
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 9.8e-35 151.8 300 38.3
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 1.7e-34 151.0 308 38.3
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 1.7e-34 151.0 305 38.4
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 4.9e-34 149.4 315 37.5
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 6.4e-34 149.1 308 37.0
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 8.3e-34 148.7 315 36.2
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 8.3e-34 148.7 327 36.4
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 1.9e-33 147.5 315 36.8
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 2.4e-33 147.1 307 36.2
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 3.2e-33 146.7 308 36.7
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 3.2e-33 146.7 308 37.3
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 3.2e-33 146.7 307 36.5
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 4.1e-33 146.4 307 36.8
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 5.4e-33 146.0 305 38.0
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 5.4e-33 146.0 317 36.9
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 5.4e-33 146.0 313 37.4
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 9.2e-33 145.2 297 41.1
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 1.6e-32 144.4 303 38.0
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 4.6e-32 142.9 308 36.4
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 6.0e-32 142.5 310 36.1
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 1.0e-31 141.7 321 37.1
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 1.0e-31 141.7 308 37.0
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.3e-31 141.4 307 36.5
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 1.3e-31 141.4 306 35.0
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 2.3e-31 140.6 303 38.0
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 2.3e-31 140.6 317 36.9
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 5.1e-31 139.4 306 34.3
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 5.1e-31 139.4 308 37.3
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 8.6e-31 138.7 308 34.4
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.5e-30 137.9 306 35.0
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.5e-30 137.9 305 36.1
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 1.5e-30 137.9 303 35.0
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 1.9e-30 137.5 309 36.6
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 3.3e-30 136.7 308 35.1
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 4.3e-30 136.3 321 35.2
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 2.8e-29 133.7 316 32.6
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 6.2e-29 132.5 304 35.2
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 1.4e-28 131.3 296 37.2
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 1.8e-28 131.0 300 37.3
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 3.1e-28 130.2 304 35.5
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 5.2e-28 129.4 308 36.0
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 8.9e-28 128.6 308 35.1
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 7.5e-27 125.6 301 37.2
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 7.5e-27 125.6 289 35.3
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 9.9e-27 125.2 265 37.4
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 1.7e-26 124.4 308 33.4
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 1.7e-26 124.4 308 35.4
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 2.9e-26 123.6 318 33.3
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 6.4e-26 122.5 265 37.0
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 8.3e-26 122.1 303 34.7
Migut.I00216 Erythranthe guttata HOM05D004089 ORTHO05D004687 1.1e-25 121.7 340 34.7
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.1e-25 121.7 264 39.0
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 7.1e-25 119.0 281 36.7
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 1.2e-24 118.2 304 34.2
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 1.2e-24 118.2 302 34.4
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 3.5e-24 116.7 313 33.9
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 3.5e-24 116.7 262 34.7
SGA_v2.0_scaffold25G10938 Striga asiatica HOM05D004089 ORTHO05D004687 3.5e-24 116.7 307 35.5
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 1.0e-23 115.2 265 35.8
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 1.3e-23 114.8 318 32.4
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 3.9e-23 113.2 322 33.9
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 1.5e-22 111.3 157 45.2
Lalb_Chr07g0178191 Lupinus albus HOM05D004089 ORTHO05D004687 4.3e-22 109.8 217 37.8
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.1e-20 105.1 152 46.7
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 6.8e-20 102.4 167 41.3
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 6.8e-20 102.4 307 33.2
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 4.4e-19 99.8 128 48.4
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 4.4e-19 99.8 161 41.0
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.2e-18 97.4 161 39.8
SEGI_21937 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 3.8e-18 96.7 307 31.6
CDE07G1350 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 5.4e-17 92.8 128 43.8
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 9.2e-17 92.0 174 39.1
CDE04G1821 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 1.2e-16 91.7 121 44.6
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 5.1e-15 86.3 306 31.4
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 7.3e-14 82.4 98 48.0
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 1.6e-13 81.3 104 45.2
Gohir.A12G179600 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.8e-13 80.5 179 34.6
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 4.7e-13 79.7 102 47.1
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 1.8e-12 77.8 137 36.5
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 1.8e-12 77.8 303 30.0
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 2.4e-12 77.4 321 27.4
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 6.9e-12 75.9 317 30.0
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 1.7e-10 71.2 301 27.2
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 2.9e-10 70.5 122 37.7
Duzib147G1274 Durio zibethinus HOM05D004089 ORTHO05D004687 5.1e-07 59.7 233 30.9
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 6.6e-07 59.3 302 26.2
SEGI_22214 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 1.1e-06 58.5 308 25.0
MSTRG.7776 Avicennia marina HOM05D003669 ORTHO05D005046 9.6e-06 55.5 293 25.3
VMungo0251G2119 Vigna mungo HOM05D003669 ORTHO05D005046 9.6e-06 55.5 290 25.2


User provided reference genes

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