Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 2.2e-54 215.3 103 100.0
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 6.6e-27 124.0 104 61.5
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 4.0e-16 88.2 44 75.0
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 9.0e-16 87.0 44 72.7
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.6e-15 85.5 62 51.6
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.6e-15 85.5 56 60.7
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 4.4e-15 84.7 43 69.8
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 9.9e-15 83.6 44 65.9
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 1.3e-14 83.2 53 54.7
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 1.7e-14 82.8 52 59.6
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.7e-14 82.8 44 68.2
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.7e-14 82.8 48 62.5
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 2.2e-14 82.4 44 63.6
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 2.9e-14 82.0 56 51.8
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 3.8e-14 81.6 56 60.7
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 6.4e-14 80.9 62 58.1
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.4e-14 80.9 63 55.6
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 8.4e-14 80.5 44 65.9
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 1.1e-13 80.1 61 54.1
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.4e-13 79.7 63 54.0
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 1.9e-13 79.3 56 57.1
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.4e-13 79.0 63 49.2
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 3.2e-13 78.6 44 59.1
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.2e-13 78.6 56 58.9
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.2e-13 78.6 56 58.9
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.2e-13 78.6 54 53.7
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 3.2e-13 78.6 57 49.1
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 4.2e-13 78.2 44 59.1
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 4.2e-13 78.2 63 49.2
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 4.2e-13 78.2 53 52.8
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 5.4e-13 77.8 82 46.3
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.4e-13 77.8 59 49.2
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 5.4e-13 77.8 44 59.1
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 5.4e-13 77.8 44 59.1
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 5.4e-13 77.8 44 59.1
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.4e-13 77.8 56 57.1
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 5.4e-13 77.8 55 49.1
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.4e-13 77.8 63 54.0
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 7.1e-13 77.4 58 50.0
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 7.1e-13 77.4 44 61.4
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 9.3e-13 77.0 63 50.8
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 9.3e-13 77.0 61 52.5
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 1.2e-12 76.6 63 50.8
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 1.2e-12 76.6 58 55.2
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.2e-12 76.6 54 48.1
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.2e-12 76.6 61 52.5
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.6e-12 76.3 43 60.5
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.6e-12 76.3 52 57.7
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 1.6e-12 76.3 57 50.9
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.6e-12 76.3 71 46.5
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.6e-12 76.3 59 55.9
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.1e-12 75.9 52 57.7
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 2.1e-12 75.9 60 50.0
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 2.7e-12 75.5 61 50.8
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.7e-12 75.5 65 47.7
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 3.5e-12 75.1 55 52.7
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.5e-12 75.1 63 50.8
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 4.6e-12 74.7 60 53.3
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 4.6e-12 74.7 43 62.8
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 4.6e-12 74.7 43 62.8
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 4.6e-12 74.7 44 56.8
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.6e-12 74.7 61 52.5
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 4.6e-12 74.7 44 59.1
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 4.6e-12 74.7 67 46.3
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 6.0e-12 74.3 44 54.5
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 6.0e-12 74.3 66 48.5
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 7.8e-12 73.9 44 59.1
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 7.8e-12 73.9 43 60.5
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 7.8e-12 73.9 63 46.0
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.0e-11 73.6 44 56.8
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.0e-11 73.6 43 65.1
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.3e-11 73.2 43 60.5
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.3e-11 73.2 56 53.6
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 1.7e-11 72.8 56 50.0
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 1.7e-11 72.8 56 50.0
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.7e-11 72.8 59 50.8
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.0e-11 72.0 44 54.5
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 5.1e-11 71.2 44 54.5
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.1e-11 71.2 58 50.0
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 8.7e-11 70.5 44 54.5
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 8.7e-11 70.5 44 52.3
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 1.1e-10 70.1 55 50.9
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.5e-10 69.7 54 53.7
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.5e-10 69.7 54 53.7
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.5e-10 69.7 54 53.7
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.9e-10 69.3 53 49.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.5e-10 68.9 47 55.3
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 3.3e-10 68.6 57 45.6
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.3e-10 68.6 63 50.8
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 4.3e-10 68.2 57 56.1
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 4.3e-10 68.2 45 68.9
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.1e-08 62.0 45 64.4
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.0e-07 59.3 45 62.2
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 7.6e-07 57.4 44 61.4
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.8e-06 55.1 32 68.8


User provided reference genes

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