Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 2.7e-36 154.8 80 100.0
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 1.2e-28 129.4 80 85.0
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 9.4e-21 103.2 65 75.4
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 9.4e-21 103.2 65 75.4
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 7.9e-20 100.1 74 67.6
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 6.7e-19 97.1 73 67.1
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 1.5e-18 95.9 71 64.8
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 2.6e-18 95.1 73 65.8
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 2.6e-18 95.1 69 62.3
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 3.3e-18 94.7 62 71.0
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 3.3e-18 94.7 74 66.2
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 3.3e-18 94.7 68 64.7
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 4.4e-18 94.4 68 63.2
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 4.4e-18 94.4 68 63.2
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 4.4e-18 94.4 68 63.2
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 4.4e-18 94.4 68 63.2
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 4.4e-18 94.4 68 69.1
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 4.4e-18 94.4 61 72.1
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 4.4e-18 94.4 76 61.8
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 5.7e-18 94.0 68 63.2
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 7.4e-18 93.6 71 63.4
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 7.4e-18 93.6 66 63.6
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 7.4e-18 93.6 67 67.2
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 9.7e-18 93.2 67 64.2
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 1.3e-17 92.8 71 63.4
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.3e-17 92.8 67 64.2
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.3e-17 92.8 66 65.2
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.3e-17 92.8 67 64.2
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 1.3e-17 92.8 72 62.5
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 1.7e-17 92.4 67 64.2
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 1.7e-17 92.4 61 72.1
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 2.2e-17 92.0 56 73.2
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 2.2e-17 92.0 71 62.0
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 2.2e-17 92.0 73 64.4
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 2.8e-17 91.7 67 64.2
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 2.8e-17 91.7 67 64.2
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 2.8e-17 91.7 67 64.2
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 2.8e-17 91.7 73 58.9
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 2.8e-17 91.7 56 75.0
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.8e-17 91.7 56 75.0
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.8e-17 91.7 56 75.0
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.8e-17 91.7 56 75.0
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 3.7e-17 91.3 66 62.1
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 3.7e-17 91.3 67 62.7
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 3.7e-17 91.3 72 61.1
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 4.8e-17 90.9 75 61.3
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 4.8e-17 90.9 68 61.8
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 4.8e-17 90.9 70 61.4
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 4.8e-17 90.9 65 66.2
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 6.3e-17 90.5 56 73.2
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 6.3e-17 90.5 54 74.1
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 6.3e-17 90.5 54 74.1
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 6.3e-17 90.5 77 59.7
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 8.2e-17 90.1 77 61.0
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 8.2e-17 90.1 76 60.5
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 8.2e-17 90.1 63 65.1
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 1.1e-16 89.7 61 67.2
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 1.1e-16 89.7 67 61.2
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 1.1e-16 89.7 54 74.1
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 1.4e-16 89.4 65 63.1
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 1.4e-16 89.4 70 62.9
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 1.4e-16 89.4 71 62.0
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 1.8e-16 89.0 71 63.4
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 1.8e-16 89.0 70 61.4
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 1.8e-16 89.0 54 74.1
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 1.8e-16 89.0 54 74.1
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 1.8e-16 89.0 74 60.8
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 2.4e-16 88.6 81 56.8
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 2.4e-16 88.6 69 63.8
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 2.4e-16 88.6 66 62.1
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.1e-16 88.2 81 56.8
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 3.1e-16 88.2 53 79.2
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 4.1e-16 87.8 72 59.7
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 4.1e-16 87.8 63 65.1
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 4.1e-16 87.8 61 63.9
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 5.3e-16 87.4 71 59.2
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 5.3e-16 87.4 54 70.4
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 5.3e-16 87.4 54 72.2
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 7.0e-16 87.0 63 63.5
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 1.2e-15 86.3 67 59.7
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 1.6e-15 85.9 77 58.4
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 2.0e-15 85.5 51 74.5
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 2.0e-15 85.5 63 61.9
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 4.5e-15 84.3 65 61.5
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 5.9e-15 84.0 73 61.6
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 7.7e-15 83.6 73 58.9
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 1.0e-14 83.2 53 73.6
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.3e-14 82.8 77 54.5
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 1.3e-14 82.8 64 59.4
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 1.7e-14 82.4 58 70.7
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 2.2e-14 82.0 54 70.4
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.2e-14 82.0 63 65.1
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 2.1e-12 75.5 49 69.4
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 2.7e-12 75.1 50 70.0
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 3.6e-12 74.7 67 55.2
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 6.1e-12 73.9 54 68.5
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 6.1e-12 73.9 98 43.9
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 6.1e-12 73.9 70 57.1
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 6.1e-12 73.9 44 75.0
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 8.0e-12 73.6 94 44.7
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 8.0e-12 73.6 46 71.7
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 2.3e-11 72.0 45 68.9
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 3.0e-11 71.6 50 68.0
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 3.0e-11 71.6 78 48.7
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 2.6e-10 68.6 42 71.4
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 1.8e-08 62.4 53 60.4
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 4.1e-08 61.2 55 56.4
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 5.3e-08 60.8 63 49.2
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 9.1e-08 60.1 63 49.2


User provided reference genes

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