Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 3.1e-198 694.9 337 100.0
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.1e-142 510.4 285 82.8
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 6.8e-121 438.0 334 64.7
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 7.7e-117 424.5 275 70.5
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.3e-116 422.9 267 72.3
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.3e-116 422.9 295 66.1
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.3e-116 422.9 299 65.9
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 6.6e-116 421.4 278 70.1
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.1e-115 420.6 277 69.7
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.1e-115 420.6 308 65.6
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.3e-115 419.1 316 63.6
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.8e-114 416.0 294 64.6
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.6e-114 415.6 278 68.3
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 3.6e-114 415.6 268 71.3
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 4.7e-114 415.2 343 59.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 6.1e-114 414.8 285 67.7
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.0e-113 414.1 276 68.5
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 5.2e-113 411.8 268 70.1
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 6.8e-113 411.4 285 67.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 6.8e-113 411.4 301 64.5
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.0e-112 409.8 278 68.3
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.0e-112 409.8 278 68.3
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.6e-112 409.5 268 69.8
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 4.4e-112 408.7 268 69.8
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 7.5e-112 407.9 321 61.1
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 9.8e-112 407.5 297 65.0
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.3e-111 407.1 292 64.7
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.7e-111 406.8 287 67.9
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.2e-111 406.4 287 67.2
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 2.2e-111 406.4 300 64.0
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 6.4e-111 404.8 269 69.1
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 8.3e-111 404.4 263 71.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.1e-110 404.1 273 68.1
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.1e-110 404.1 267 70.0
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.4e-110 403.7 273 65.9
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 2.4e-110 402.9 283 67.1
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.2e-110 402.5 305 61.6
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 3.2e-110 402.5 275 67.3
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 4.1e-110 402.1 267 70.0
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 5.4e-110 401.7 267 68.5
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.0e-110 401.4 268 70.1
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.7e-109 399.4 279 67.4
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 3.5e-109 399.1 304 61.5
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 3.5e-109 399.1 296 64.9
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 4.6e-109 398.7 285 66.3
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 4.6e-109 398.7 268 68.3
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 7.8e-109 397.9 317 61.8
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 7.8e-109 397.9 302 62.9
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.3e-108 396.4 267 68.2
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 5.0e-108 395.2 276 66.7
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 5.0e-108 395.2 267 67.4
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-107 394.0 288 64.2
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.9e-107 393.3 285 64.2
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 9.5e-107 391.0 267 67.8
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 1.2e-106 390.6 264 67.8
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.6e-106 390.2 281 65.1
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.1e-106 389.8 276 65.6
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.1e-106 389.8 273 66.3
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.8e-106 389.4 268 66.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 4.7e-106 388.7 267 66.7
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 8.0e-106 387.9 279 65.2
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.0e-105 387.5 283 63.3
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.1e-105 386.0 267 66.7
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 4.0e-105 385.6 285 63.2
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.5e-104 383.6 313 60.4
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.0e-104 383.3 285 64.2
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 2.6e-104 382.9 298 61.1
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.6e-104 382.9 291 64.3
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.4e-104 382.5 295 61.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 4.4e-104 382.1 288 62.2
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 5.8e-104 381.7 271 65.3
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 7.5e-104 381.3 294 61.9
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 9.8e-104 380.9 271 65.3
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 2.9e-103 379.4 269 66.9
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 6.4e-103 378.3 299 60.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 8.3e-103 377.9 273 64.1
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.3e-103 377.9 291 62.2
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.1e-102 377.5 260 67.3
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.9e-102 376.7 285 63.2
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.4e-102 376.3 269 65.4
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.4e-102 376.3 266 65.4
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 5.4e-102 375.2 274 63.1
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.2e-101 374.0 262 65.3
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 2.0e-101 373.2 302 61.3
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 7.8e-101 371.3 285 62.1
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-100 370.9 270 64.1
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.3e-100 370.5 296 60.1
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 3.9e-100 369.0 270 63.7
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 6.6e-100 368.2 271 62.7
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.1e-99 367.5 303 60.1
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 3.6e-98 362.5 272 62.5
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 4.7e-98 362.1 285 60.0
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 6.2e-98 361.7 251 65.7
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.4e-97 360.5 258 63.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.1e-97 359.4 285 60.4
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.9e-97 357.8 283 61.1
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.2e-96 357.5 285 59.6
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.0e-96 356.7 274 61.3
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 6.4e-95 351.7 297 59.6
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 8.3e-95 351.3 279 60.2
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.4e-94 348.6 278 59.7
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 9.2e-94 347.8 287 57.5
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.7e-93 346.3 298 57.7
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 6.6e-92 341.7 290 57.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.5e-91 340.5 268 60.1
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.3e-91 338.2 229 69.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.1e-90 336.7 284 58.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 3.6e-90 335.9 229 67.7
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 2.0e-88 330.1 288 57.3
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 5.8e-88 328.6 285 55.1
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 3.7e-87 325.9 263 60.1
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.9e-86 323.6 334 50.6
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.2e-86 322.8 334 50.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.6e-85 318.9 337 52.2
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 6.0e-85 318.5 335 50.7
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.0e-84 317.8 368 47.8
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 8.6e-84 314.7 258 54.7
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.1e-83 314.3 258 55.4
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.6e-82 310.5 257 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 2.1e-82 310.1 271 54.6
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.1e-81 307.8 269 56.9
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.6e-80 303.1 270 57.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.2e-79 300.1 316 48.7
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 3.8e-79 299.3 293 50.9
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.4e-78 297.4 215 64.2
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 2.1e-77 293.5 267 54.3
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.1e-75 287.7 187 71.7
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.5e-75 286.6 296 47.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 9.0e-73 278.1 200 64.5
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.0e-72 276.9 264 51.5
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.3e-70 268.1 263 52.1
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-69 266.5 263 51.7
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.9e-67 260.4 296 47.0
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.4e-67 258.5 272 50.0
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 9.6e-67 258.1 296 46.6
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.6e-66 256.1 311 46.3
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.2e-64 251.1 265 48.7
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.5e-61 239.6 334 40.1
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.0e-60 238.0 151 71.5
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.8e-57 227.3 157 66.2
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 5.3e-57 225.7 176 62.5
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.9e-57 225.3 187 61.5
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.0e-57 224.9 187 61.0
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 9.0e-57 224.9 485 31.8
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 4.5e-56 222.6 157 67.5
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 3.8e-55 219.5 168 61.3
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 9.3e-54 214.9 148 67.6
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.7e-53 213.4 150 65.3
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 7.9e-53 211.8 150 64.7
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.8e-52 210.7 247 46.2
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.8e-52 210.7 258 41.1
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.8e-52 210.7 150 65.3
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 6.7e-52 208.8 150 64.0
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 3.3e-51 206.5 168 58.9
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 9.0e-49 198.4 270 41.1
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.5e-48 197.6 344 32.6
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.5e-43 181.0 114 71.1
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.6e-42 177.6 113 68.1
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 8.2e-42 175.3 107 73.8
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 3.1e-41 173.3 133 62.4
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.9e-40 169.1 134 58.2
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 4.2e-38 162.9 111 64.9
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 9.4e-38 161.8 127 57.5
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 8.8e-36 155.2 120 60.0
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 3.3e-35 153.3 104 69.2
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 6.1e-29 132.5 94 64.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 6.1e-29 132.5 138 49.3
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.7e-27 125.9 93 57.0
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.7e-27 125.9 93 57.0
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.3e-26 124.8 90 62.2
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.7e-26 123.2 186 39.2
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.1e-22 111.7 86 58.1
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 4.0e-20 103.2 51 98.0
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.6e-16 91.3 73 52.1
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.9e-14 84.3 67 55.2
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 2.5e-14 84.0 56 67.9
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.2e-12 76.3 51 64.7
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.7e-07 61.2 37 78.4
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.2e-07 60.8 45 60.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.9e-06 57.8 43 60.5


User provided reference genes

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