Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.7e-92 342.8 190 100.0
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 1.1e-72 276.9 167 94.0
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.4e-70 270.0 177 88.1
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 3.1e-70 268.9 160 94.4
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.7e-65 253.1 142 97.2
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.4e-61 238.8 179 79.3
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 7.1e-59 231.1 167 82.0
Zm00001eb411800 Zea mays HOM05D022290 ORTHO05D005169 6.4e-44 181.4 113 93.8
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 2.8e-39 166.0 98 91.8
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 9.3e-35 151.0 94 91.5
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 3.5e-26 122.5 175 50.3
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.4e-22 109.8 179 44.1
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.5e-21 105.5 179 44.1
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 5.9e-21 105.1 178 43.8
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.7e-20 103.6 174 40.2
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.2e-20 103.2 179 40.2
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 2.2e-20 103.2 182 43.4
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 3.8e-20 102.4 180 42.2
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.8e-20 102.4 180 41.7
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 5.0e-20 102.1 182 41.8
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.0e-20 102.1 180 43.3
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 5.0e-20 102.1 180 42.2
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 6.5e-20 101.7 180 41.7
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.1e-19 100.9 180 43.3
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 1.1e-19 100.9 176 41.5
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.4e-19 100.5 182 40.1
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.4e-19 100.5 183 42.1
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.4e-19 100.5 178 40.4
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.4e-19 100.5 177 41.8
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.5e-19 99.8 180 45.0
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.5e-19 99.8 179 41.3
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 2.5e-19 99.8 181 40.3
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.2e-19 99.4 183 37.7
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 3.2e-19 99.4 178 41.0
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 4.2e-19 99.0 180 41.7
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 4.2e-19 99.0 181 42.0
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 9.4e-19 97.8 176 39.2
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.2e-18 97.4 181 40.3
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.2e-18 97.4 182 41.2
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 1.6e-18 97.1 181 44.2
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.6e-18 97.1 182 41.2
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-18 97.1 177 39.5
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.6e-18 97.1 178 39.9
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 2.1e-18 96.7 178 42.7
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 3.6e-18 95.9 186 37.6
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 4.6e-18 95.5 180 40.0
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 6.1e-18 95.1 179 40.2
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 7.9e-18 94.7 175 40.6
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.9e-18 94.7 180 41.1
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.0e-17 94.4 186 38.2
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.0e-17 94.4 182 41.2
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.0e-17 94.4 180 41.1
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.4e-17 94.0 175 40.0
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.8e-17 93.6 180 41.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 2.3e-17 93.2 174 40.2
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 3.0e-17 92.8 176 40.9
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 3.0e-17 92.8 175 38.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.9e-17 92.4 175 40.0
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.1e-17 92.0 182 36.8
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.1e-17 92.0 179 38.5
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.1e-17 92.0 179 36.9
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 5.1e-17 92.0 181 38.7
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 6.7e-17 91.7 181 40.3
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.1e-16 90.9 182 36.8
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.1e-16 90.9 200 36.5
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.1e-16 90.9 180 38.3
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.5e-16 90.5 172 39.0
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.5e-16 90.5 184 38.6
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.5e-16 90.5 185 38.9
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.5e-16 90.5 177 37.9
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.5e-16 90.5 184 39.1
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.5e-16 90.5 172 38.4
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.0e-16 90.1 177 37.9
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.5e-16 89.7 169 39.6
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.3e-16 89.0 178 39.3
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 4.3e-16 89.0 183 38.3
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 5.7e-16 88.6 172 39.0
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 9.7e-16 87.8 176 36.9
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.7e-16 87.8 162 37.0
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.3e-15 87.4 189 38.1
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.7e-15 87.0 176 40.3
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.8e-15 86.3 170 36.5
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 6.3e-15 85.1 176 39.8
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 8.2e-15 84.7 178 37.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 8.2e-15 84.7 172 37.8
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.1e-14 84.3 180 39.4
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.4e-14 84.0 172 37.8
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.8e-14 83.6 181 34.8
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.4e-14 83.2 196 34.2
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 2.4e-14 83.2 196 34.2
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.4e-14 83.2 186 40.3
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 3.1e-14 82.8 180 38.3
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 4.1e-14 82.4 172 33.7
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.3e-14 82.0 172 39.0
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.9e-14 81.6 184 36.4
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 9.1e-14 81.3 177 39.0
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.5e-13 80.5 193 34.2
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.4e-13 79.3 121 41.3
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 3.4e-13 79.3 182 37.4
Zm00001eb182170 Zea mays HOM05D004401 ORTHO05D005169 4.5e-13 79.0 52 90.4
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.3e-12 77.4 182 35.7
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.7e-12 77.0 183 36.6
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 6.5e-12 75.1 179 36.3
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.4e-11 73.9 179 34.6
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.9e-11 73.6 173 38.2
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 3.2e-11 72.8 174 33.3
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.2e-11 72.4 190 35.3
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 4.2e-11 72.4 199 35.2
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 5.5e-11 72.0 185 33.5
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 7.2e-11 71.6 147 32.0
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.6e-10 70.5 184 33.2
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.1e-10 70.1 194 36.1
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 3.6e-10 69.3 197 35.5
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 6.1e-10 68.6 192 35.9
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 7.9e-10 68.2 167 35.3
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.0e-09 67.8 181 33.7
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.4e-09 67.4 182 35.2
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.8e-09 67.0 198 34.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.8e-09 67.0 181 34.8
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.3e-09 66.6 181 34.8
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 5.1e-09 65.5 180 35.6
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.8e-09 64.7 184 37.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.1e-08 64.3 166 33.1
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.1e-08 64.3 113 38.1
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 2.0e-08 63.5 215 33.0
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 2.6e-08 63.2 177 33.9
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 3.3e-08 62.8 165 36.4
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.4e-08 62.4 184 36.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.4e-08 62.4 184 35.3
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 7.4e-08 61.6 189 33.9
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.3e-07 60.8 173 35.3
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.8e-07 59.7 167 29.3
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 6.3e-07 58.5 162 35.8
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 8.2e-07 58.2 173 34.1


User provided reference genes

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