Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb130170 Zea mays HOM05D003599 ORTHO05D004221 1.8e-44 182.2 90 100.0
Zm00001eb083560 Zea mays HOM05D003599 ORTHO05D004221 8.9e-44 179.9 90 98.9
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 1.2e-43 179.5 89 98.9
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 1.5e-43 179.1 89 97.8
Zm00001eb391970 Zea mays HOM05D003599 ORTHO05D004221 2.6e-43 178.3 90 97.8
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 4.4e-43 177.6 89 96.6
Zm00001eb420320 Zea mays HOM05D003599 ORTHO05D004221 1.7e-42 175.6 89 96.6
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 2.9e-42 174.9 89 94.4
Zm00001eb411510 Zea mays HOM05D003599 ORTHO05D004221 1.0e-39 166.4 86 95.3
TAR369G0496 Trochodendron aralioides HOM05D003599 ORTHO05D004221 1.7e-39 165.6 89 89.9
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 2.3e-39 165.2 89 89.9
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 2.3e-39 165.2 89 89.9
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 3.0e-39 164.9 89 88.8
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 3.9e-39 164.5 89 89.9
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 6.6e-39 163.7 89 87.6
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 8.6e-39 163.3 89 87.6
MBI01_g25789_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.1e-38 162.9 89 87.6
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 1.1e-38 162.9 89 87.6
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 1.1e-38 162.9 89 87.6
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 1.1e-38 162.9 89 87.6
Actinidia31045 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.5e-38 161.8 89 86.5
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 2.5e-38 161.8 89 86.5
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 2.5e-38 161.8 89 86.5
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 2.5e-38 161.8 89 86.5
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 2.5e-38 161.8 89 86.5
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 3.3e-38 161.4 89 86.5
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 3.3e-38 161.4 89 86.5
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 3.3e-38 161.4 89 86.5
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 86.5
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 86.5
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 86.5
FAN12G0382 Fragaria x ananassa HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 86.5
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 86.5
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 85.4
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 85.4
SGA_v2.0_scaffold260G45866 Striga asiatica HOM05D003599 ORTHO05D004221 5.6e-38 160.6 89 85.4
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 7.3e-38 160.2 89 85.4
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 9.5e-38 159.8 89 86.5
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 9.5e-38 159.8 89 85.4
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 85.4
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 85.4
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 85.4
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 85.4
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 85.4
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 86.5
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 85.4
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 1.2e-37 159.5 89 85.4
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 85.4
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 84.3
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 85.4
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 85.4
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 84.3
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 84.3
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 84.3
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 86.5
Solyc01g086750.4 Solanum lycopersicum HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 84.3
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 84.3
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 1.6e-37 159.1 89 85.4
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 2.1e-37 158.7 89 85.4
TPR.G26308 Trifolium pratense HOM05D003599 ORTHO05D004221 2.1e-37 158.7 89 84.3
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 2.8e-37 158.3 89 84.3
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 2.8e-37 158.3 89 84.3
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 2.8e-37 158.3 89 84.3
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 2.8e-37 158.3 89 84.3
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 2.8e-37 158.3 89 83.1
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 2.8e-37 158.3 89 85.4
HPP92_003005 Vanilla planifolia HOM05D003599 ORTHO05D004221 2.8e-37 158.3 89 86.5
Cpa.g.sc945.1 Carica papaya HOM05D003599 ORTHO05D004221 3.6e-37 157.9 89 84.3
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 3.6e-37 157.9 89 83.1
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 3.6e-37 157.9 89 84.3
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 3.6e-37 157.9 89 84.3
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 3.6e-37 157.9 89 84.3
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 4.7e-37 157.5 89 84.3
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 4.7e-37 157.5 89 83.1
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 4.7e-37 157.5 89 85.4
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 4.7e-37 157.5 89 83.1
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 4.7e-37 157.5 89 84.3
SGA_v2.0_scaffold5G03126 Striga asiatica HOM05D003599 ORTHO05D004221 6.2e-37 157.1 89 83.1
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 8.0e-37 156.8 89 84.3
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 8.0e-37 156.8 89 85.4
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 8.0e-37 156.8 89 82.0
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.1e-36 156.4 89 84.3
Lalb_Chr20g0108091 Lupinus albus HOM05D003599 ORTHO05D004221 1.4e-36 156.0 89 83.1
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 1.4e-36 156.0 89 84.3
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 1.4e-36 156.0 89 83.1
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 1.8e-36 155.6 89 84.3
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 1.8e-36 155.6 89 83.1
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 1.8e-36 155.6 89 83.1
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.8e-36 155.6 89 83.1
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 1.8e-36 155.6 89 83.1
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 2.3e-36 155.2 89 83.1
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 2.3e-36 155.2 89 82.0
unitig_0.g1376 Utricularia gibba HOM05D003599 ORTHO05D004221 2.3e-36 155.2 89 80.9
SMO141G0154 Selaginella moellendorffii HOM05D003599 ORTHO05D004221 3.1e-36 154.8 89 84.3
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 3.1e-36 154.8 89 84.3
CDE05G2426 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 4.0e-36 154.5 89 84.3
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 4.0e-36 154.5 89 83.1
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 5.2e-36 154.1 89 83.1
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 6.8e-36 153.7 89 83.1
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 6.8e-36 153.7 89 83.1
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 8.9e-36 153.3 89 83.1
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 1.2e-35 152.9 89 82.0
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 1.2e-35 152.9 89 79.8
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 1.5e-35 152.5 89 80.9
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 1.5e-35 152.5 89 79.8
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 2.6e-35 151.8 89 79.8
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 5.8e-35 150.6 89 78.7
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 5.8e-35 150.6 89 78.7
SHI28919 Sapria himalayana HOM05D003599 ORTHO05D004221 5.8e-35 150.6 89 79.8
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 9.8e-35 149.8 89 78.7
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 1.3e-34 149.4 89 78.7
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 1.3e-34 149.4 89 78.7
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 1.3e-34 149.4 89 78.7
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 1.3e-34 149.4 89 78.7
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 1.3e-34 149.4 89 78.7
BcaNung06096 Brassica carinata HOM05D003599 ORTHO05D004221 2.9e-34 148.3 89 78.7
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 2.9e-34 148.3 89 78.7
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 2.9e-34 148.3 89 78.7
BolC8t50358H Brassica oleracea HOM05D003599 ORTHO05D004221 2.9e-34 148.3 89 78.7
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 2.9e-34 148.3 89 78.7
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 2.9e-34 148.3 89 78.7
BcaB02g08585 Brassica carinata HOM05D003599 ORTHO05D004221 3.7e-34 147.9 89 77.5
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 3.7e-34 147.9 89 80.9
vmacro13648 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 3.7e-34 147.9 100 73.0
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 4.9e-34 147.5 89 78.7
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 4.9e-34 147.5 89 77.5
Medtr0321s0030 Medicago truncatula HOM05D003599 ORTHO05D004221 6.4e-34 147.1 89 80.9
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 1.1e-33 146.4 89 77.5
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 1.1e-33 146.4 89 77.5
Actinidia31687 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.7e-32 141.7 79 84.8
CBR_g110 Chara braunii HOM05D003599 ORTHO05D004221 1.5e-30 136.0 89 75.3
TPR.G12253 Trifolium pratense HOM05D003599 ORTHO05D004221 2.5e-30 135.2 78 83.3
Pp3c5_14160 Physcomitrium patens HOM05D003599 ORTHO05D004221 1.5e-19 99.4 89 58.4
Psat1g032800 Pisum sativum HOM05D003599 ORTHO05D004221 6.4e-18 94.0 54 79.6
Zm00001eb185890 Zea mays HOM05D001733 ORTHO05D003162 6.6e-15 84.0 40 100.0
Actinidia32321 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.0e-11 72.4 43 79.1


User provided reference genes

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