Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb128810 Zea mays HOM05D006317 ORTHO05D007852 8.6e-58 226.9 122 100.0
Os05g0486200 Oryza sativa ssp. japonica HOM05D006317 ORTHO05D007852 1.5e-49 199.5 123 88.6
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 3.9e-42 174.9 122 75.4
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 5.1e-42 174.5 122 75.4
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 5.1e-42 174.5 122 75.4
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 5.1e-42 174.5 121 75.2
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 8.6e-42 173.7 122 72.1
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 1.5e-41 172.9 122 74.6
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 1.5e-41 172.9 122 75.4
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 1.5e-41 172.9 122 74.6
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 1.9e-41 172.6 122 74.6
Ciclev10002865m.g Citrus clementina HOM05D006317 ORTHO05D007852 2.5e-41 172.2 122 72.1
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 2.5e-41 172.2 122 73.8
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 3.3e-41 171.8 122 73.8
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 4.3e-41 171.4 122 73.8
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 5.6e-41 171.0 122 72.1
Sed0014816 Sechium edule HOM05D006317 ORTHO05D007852 5.6e-41 171.0 122 73.8
Oeu051968.1 Olea europaea HOM05D006317 ORTHO05D007852 7.3e-41 170.6 122 73.0
ECA246G3352 Erigeron canadensis HOM05D006317 ORTHO05D007852 9.5e-41 170.2 122 72.1
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 9.5e-41 170.2 122 72.1
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 1.2e-40 169.9 122 72.1
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 1.2e-40 169.9 122 72.1
Oeu021883.1 Olea europaea HOM05D006317 ORTHO05D007852 2.1e-40 169.1 122 73.0
CANSAT35G0412 Cannabis sativa HOM05D006317 ORTHO05D007852 2.8e-40 168.7 122 72.1
Lsat_1_v5_gn_6_109060 Lactuca sativa HOM05D006317 ORTHO05D007852 2.8e-40 168.7 122 71.3
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 2.8e-40 168.7 122 73.0
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 2.8e-40 168.7 122 71.3
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 2.8e-40 168.7 122 71.3
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 2.8e-40 168.7 122 70.5
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 3.6e-40 168.3 122 71.3
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 3.6e-40 168.3 122 70.5
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 3.6e-40 168.3 122 73.0
AUR62016336 Chenopodium quinoa HOM05D006317 ORTHO05D007852 4.7e-40 167.9 122 72.1
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 4.7e-40 167.9 122 71.3
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 6.2e-40 167.5 122 71.3
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 8.1e-40 167.2 122 68.9
Peaxi162Scf01003g00121 Petunia axillaris HOM05D006317 ORTHO05D007852 1.1e-39 166.8 122 71.3
HPP92_021212 Vanilla planifolia HOM05D006317 ORTHO05D007852 1.1e-39 166.8 122 72.1
Aqoxy1G01739 Aquilegia oxysepala HOM05D006317 ORTHO05D007852 1.4e-39 166.4 122 71.3
MSTRG.25364 Avicennia marina HOM05D006317 ORTHO05D007852 1.4e-39 166.4 120 71.7
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 1.4e-39 166.4 120 70.8
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 1.4e-39 166.4 120 71.7
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 1.8e-39 166.0 122 69.7
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 2.3e-39 165.6 122 69.7
Solyc11g005000.2 Solanum lycopersicum HOM05D006317 ORTHO05D007852 4.0e-39 164.9 122 71.3
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 4.0e-39 164.9 120 71.7
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 5.2e-39 164.5 120 71.7
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 5.2e-39 164.5 122 69.7
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 5.2e-39 164.5 122 69.7
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 5.2e-39 164.5 122 68.0
Potri.019G066600 Populus trichocarpa HOM05D006317 ORTHO05D007852 5.2e-39 164.5 121 70.2
Actinidia29484 Actinidia chinensis HOM05D006317 ORTHO05D007852 8.9e-39 163.7 117 73.5
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 8.9e-39 163.7 122 68.0
Cc10_g12550 Coffea canephora HOM05D006317 ORTHO05D007852 1.5e-38 162.9 120 72.5
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 1.5e-38 162.9 122 69.7
Nitab4.5_0001168g0010 Nicotiana tabacum HOM05D006317 ORTHO05D007852 1.5e-38 162.9 122 69.7
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 1.5e-38 162.9 120 70.8
PGSC0003DMG400006049 Solanum tuberosum HOM05D006317 ORTHO05D007852 1.5e-38 162.9 122 71.3
Nitab4.5_0002045g0100 Nicotiana tabacum HOM05D006317 ORTHO05D007852 2.0e-38 162.5 122 69.7
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 2.0e-38 162.5 122 69.7
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 2.6e-38 162.2 122 68.9
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 2.6e-38 162.2 122 68.9
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 4.4e-38 161.4 120 68.3
CAN.G342.14 Capsicum annuum HOM05D006317 ORTHO05D007852 4.4e-38 161.4 122 69.7
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 4.4e-38 161.4 120 70.0
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 5.8e-38 161.0 121 66.9
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 7.6e-38 160.6 122 68.0
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 7.6e-38 160.6 120 70.8
Sopen11g001020 Solanum pennellii HOM05D006317 ORTHO05D007852 7.6e-38 160.6 122 69.7
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 9.9e-38 160.2 122 67.2
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 1.3e-37 159.8 122 65.6
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 1.3e-37 159.8 122 65.6
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 1.3e-37 159.8 122 67.2
Migut.N03266 Erythranthe guttata HOM05D006317 ORTHO05D007852 1.3e-37 159.8 122 70.5
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 1.7e-37 159.5 122 68.9
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 1.7e-37 159.5 120 70.0
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 2.2e-37 159.1 122 66.4
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 2.9e-37 158.7 122 65.6
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 2.9e-37 158.7 120 70.0
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 3.7e-37 158.3 120 67.5
SalBow2G0856 Salvia bowleyana HOM05D006317 ORTHO05D007852 4.9e-37 157.9 120 70.8
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 4.9e-37 157.9 120 69.2
Ah.01g020580 Amaranthus hybridus HOM05D006317 ORTHO05D007852 6.4e-37 157.5 122 67.2
CDE06G2198 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 6.4e-37 157.5 122 67.2
HanXRQChr05g0148711 Helianthus annuus HOM05D006317 ORTHO05D007852 6.4e-37 157.5 115 71.3
unitig_22.g5398 Utricularia gibba HOM05D006317 ORTHO05D007852 6.4e-37 157.5 120 70.0
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 8.3e-37 157.1 122 67.2
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 1.4e-36 156.4 122 65.6
unitig_8.g3836 Utricularia gibba HOM05D006317 ORTHO05D007852 1.4e-36 156.4 120 69.2
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 2.4e-36 155.6 120 66.7
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 7.1e-36 154.1 121 68.6
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 7.1e-36 154.1 121 68.6
arahy.Tifrunner.gnm1.ann1.0GY0RD Arachis hypogaea HOM05D006317 ORTHO05D007852 9.2e-36 153.7 119 68.9
arahy.Tifrunner.gnm1.ann1.ID1H8K Arachis hypogaea HOM05D006317 ORTHO05D007852 9.2e-36 153.7 119 68.9
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 9.2e-36 153.7 121 67.8
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 9.2e-36 153.7 121 67.8
Psat5g085080 Pisum sativum HOM05D006317 ORTHO05D007852 1.2e-35 153.3 120 66.7
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 1.6e-35 152.9 118 68.6
SGA_v2.0_scaffold25G11134 Striga asiatica HOM05D006317 ORTHO05D007852 1.6e-35 152.9 109 71.6
CDE07G1891 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 3.5e-35 151.8 122 67.2
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 3.5e-35 151.8 123 65.9
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 6.0e-35 151.0 122 66.4
Sabra19G0078300 Salix brachista HOM05D006317 ORTHO05D007852 1.5e-33 146.4 135 61.5
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 1.9e-33 146.0 172 51.7
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 9.6e-33 143.7 145 55.9
MBI06_g36652_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 1.8e-31 139.4 122 62.3
Mapoly0014s0111 Marchantia polymorpha HOM05D006317 ORTHO05D007852 5.2e-31 137.9 115 60.9
SHI09189 Sapria himalayana HOM05D006317 ORTHO05D007852 5.8e-30 134.4 131 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4689 Anthoceros agrestis HOM05D006317 ORTHO05D007852 9.9e-30 133.7 117 58.1
FAN27G3154 Fragaria x ananassa HOM05D006317 ORTHO05D007852 3.0e-26 122.1 91 70.3
SMO298G0052 Selaginella moellendorffii HOM05D006317 ORTHO05D007852 3.0e-26 122.1 101 63.4
vmacro00858 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 6.6e-26 120.9 91 71.4
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 8.7e-26 120.6 91 71.4
EL10Ac9g21899 Beta vulgaris HOM05D006317 ORTHO05D007852 1.1e-25 120.2 91 69.2
CBR_g12067 Chara braunii HOM05D006317 ORTHO05D007852 1.9e-25 119.4 103 59.2
vmacro16444 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 4.3e-25 118.2 94 69.1
BcaB03g14260 Brassica carinata HOM05D006317 ORTHO05D007852 1.3e-21 106.7 126 50.0
Nn7g37402 Nelumbo nucifera HOM05D006317 ORTHO05D007852 2.4e-20 102.4 70 70.0
Haze_17997 Corylus avellana HOM05D001650 ORTHO05D001592 6.0e-19 97.8 62 74.2
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 1.7e-18 96.3 69 73.9
CSS0043705 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 6.0e-11 71.2 46 71.7
Gohir.A02G071601 Gossypium hirsutum HOM05D006317 ORTHO05D007852 1.5e-09 66.6 58 65.5
QL05p046423 Quercus lobata HOM05D006317 ORTHO05D007852 2.8e-08 62.4 51 58.8
SGA_v2.0_scaffold28G11977 Striga asiatica HOM05D006317 ORTHO05D007852 4.8e-08 61.6 52 67.3
FAN15G1039 Fragaria x ananassa HOM05D006317 ORTHO05D007852 5.3e-07 58.2 37 70.3
BolC5t30761H Brassica oleracea HOM05D006317 ORTHO05D007852 4.5e-06 55.1 52 65.4


User provided reference genes

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