Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 1.1e-189 666.4 330 100.0
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.4e-91 340.5 296 55.4
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 3.3e-88 329.3 301 53.2
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 2.8e-87 326.2 294 55.4
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 3.7e-87 325.9 298 53.7
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 6.3e-87 325.1 301 54.8
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 1.1e-86 324.3 301 52.5
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 1.8e-86 323.6 294 53.1
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 1.8e-86 323.6 294 55.4
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 5.3e-86 322.0 301 54.2
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 4.5e-85 318.9 299 53.2
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 1.7e-84 317.0 303 53.1
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 5.0e-84 315.5 298 52.7
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 5.0e-84 315.5 293 52.9
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 1.4e-83 313.9 295 53.6
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 1.4e-83 313.9 305 52.8
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 9.4e-83 311.2 295 51.5
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 1.2e-82 310.8 316 48.7
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 4.6e-82 308.9 303 50.5
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 7.9e-82 308.1 298 51.0
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 1.4e-81 307.4 315 50.8
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.4e-81 307.4 324 46.9
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.4e-81 307.4 302 51.3
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 3.0e-81 306.2 306 49.0
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 5.1e-81 305.4 297 51.9
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 5.1e-81 305.4 301 50.5
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 5.1e-81 305.4 303 51.5
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 6.7e-81 305.1 300 52.0
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 6.7e-81 305.1 304 51.0
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 6.7e-81 305.1 296 50.7
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 8.8e-81 304.7 294 52.7
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 8.8e-81 304.7 276 55.1
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.1e-80 304.3 294 53.4
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 2.0e-80 303.5 297 51.5
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 2.0e-80 303.5 300 51.0
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 2.5e-80 303.1 299 51.5
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 4.3e-80 302.4 320 48.4
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 4.3e-80 302.4 317 47.0
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 5.7e-80 302.0 318 50.3
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 7.4e-80 301.6 296 50.3
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.3e-79 300.8 322 48.4
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 1.3e-79 300.8 298 51.7
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 2.2e-79 300.1 300 51.0
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 2.8e-79 299.7 298 51.3
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 3.7e-79 299.3 294 51.4
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 3.7e-79 299.3 302 50.0
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 4.8e-79 298.9 303 48.5
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 6.3e-79 298.5 296 50.7
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 6.3e-79 298.5 302 50.3
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 8.2e-79 298.1 297 51.9
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 8.2e-79 298.1 298 50.7
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 1.8e-78 297.0 294 51.0
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 2.4e-78 296.6 322 48.1
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 3.1e-78 296.2 318 47.8
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 6.9e-78 295.0 301 50.2
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 6.9e-78 295.0 306 47.4
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.0e-77 293.5 297 49.5
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 4.5e-77 292.4 301 50.5
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 4.5e-77 292.4 297 50.2
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 1.3e-76 290.8 300 50.0
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.3e-76 290.8 295 50.8
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 2.2e-76 290.0 321 48.9
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 2.9e-76 289.7 312 51.3
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 2.9e-76 289.7 295 50.5
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 6.5e-76 288.5 307 49.5
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 6.5e-76 288.5 341 46.3
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 4.2e-75 285.8 307 49.5
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 4.2e-75 285.8 308 49.4
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 5.5e-75 285.4 287 50.9
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 5.5e-75 285.4 303 49.2
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 7.2e-75 285.0 321 46.4
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 2.7e-74 283.1 295 47.5
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 3.6e-74 282.7 271 52.8
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 1.0e-73 281.2 301 47.8
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 1.4e-73 280.8 307 47.9
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 3.0e-73 279.6 245 53.5
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 5.1e-73 278.9 245 53.5
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 6.7e-73 278.5 300 48.0
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 1.1e-72 277.7 329 45.6
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 2.6e-72 276.6 244 57.0
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 8.2e-71 271.6 295 47.8
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 2.4e-70 270.0 295 49.5
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.5e-69 266.2 298 47.3
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 1.7e-68 263.8 243 54.7
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 3.8e-68 262.7 273 50.5
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 6.5e-68 261.9 239 56.5
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 1.5e-67 260.8 274 49.6
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 2.5e-67 260.0 298 46.0
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.2e-66 257.7 232 55.6
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 1.6e-66 257.3 296 47.3
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.6e-66 256.1 232 55.2
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 1.8e-65 253.8 384 39.8
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 8.2e-63 245.0 280 46.4
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.6e-61 240.0 277 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.8e-57 227.3 301 43.5
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 1.8e-57 227.3 308 42.9
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 2.2e-55 220.3 283 42.8
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 3.1e-54 216.5 299 41.5
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 2.5e-51 206.8 299 42.1
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 2.1e-50 203.8 186 53.2
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 1.8e-49 200.7 301 38.9
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 3.5e-45 186.4 272 41.9
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 2.5e-43 180.3 364 33.8
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 3.3e-43 179.9 385 33.8
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 3.3e-43 179.9 231 44.6
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.2e-42 177.9 163 55.8
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 6.6e-36 155.6 111 66.7
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.6e-29 134.4 235 36.2
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 2.0e-29 134.0 325 33.5
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 3.3e-19 100.1 102 51.0
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 3.6e-18 96.7 117 43.6
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 6.8e-17 92.4 146 35.6
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.2e-14 83.6 123 37.4
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 2.1e-10 70.9 64 54.7


User provided reference genes

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