Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 0.0e+00 1096.3 1091 100.0
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 1.9e-156 557.8 1091 68.4
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 6.1e-38 164.1 1075 45.3
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 4.8e-35 154.5 1084 49.4
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 8.0e-30 137.1 1080 47.1
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 8.0e-30 137.1 733 38.6
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 3.4e-28 131.7 732 44.9
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 3.4e-28 131.7 1077 46.2
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 7.5e-28 130.6 565 51.2
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 9.8e-28 130.2 210 35.2
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 2.4e-26 125.6 536 47.2
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 2.0e-25 122.5 536 51.9
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 7.7e-25 120.6 210 33.8
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 3.8e-24 118.2 538 52.2
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 6.6e-24 117.5 194 36.6
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 1.5e-23 116.3 535 52.3
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.5e-23 116.3 537 52.1
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 3.3e-23 115.2 194 36.6
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 4.2e-23 114.8 242 29.8
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 4.2e-23 114.8 553 52.1
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 5.5e-23 114.4 1073 41.1
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 7.2e-23 114.0 531 53.1
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 7.2e-23 114.0 545 52.5
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 2.8e-22 112.1 1074 45.2
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 3.6e-22 111.7 1078 46.3
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 4.7e-22 111.3 537 51.4
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 8.0e-22 110.5 538 51.5
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 8.0e-22 110.5 538 51.5
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.0e-21 110.2 727 38.8
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 4.0e-21 108.2 247 29.1
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 4.0e-21 108.2 550 51.8
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 5.2e-21 107.8 235 30.6
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 5.2e-21 107.8 247 29.1
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 8.9e-21 107.1 199 32.2
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 1.5e-20 106.3 1074 41.0
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.0e-20 105.9 235 30.6
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 3.4e-20 105.1 208 31.7
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 4.4e-20 104.8 247 28.7
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 7.5e-20 104.0 235 31.1
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 9.8e-20 103.6 549 49.9
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.3e-19 103.2 210 30.5
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 1.7e-19 102.8 235 28.5
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 1.7e-19 102.8 540 50.7
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.7e-19 102.8 731 34.9
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 2.2e-19 102.4 234 28.6
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 2.2e-19 102.4 534 51.9
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 2.9e-19 102.1 235 29.4
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 3.7e-19 101.7 227 29.5
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 6.3e-19 100.9 236 30.1
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 8.3e-19 100.5 235 29.4
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 1.1e-18 100.1 535 47.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 2.4e-18 99.0 191 32.5
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 5.4e-18 97.8 235 28.9
Zm00001eb326140 Zea mays HOM05D003335 ORTHO05D003853 5.4e-18 97.8 57 91.2
Zm00001eb355390 Zea mays HOM05D003335 ORTHO05D003853 5.4e-18 97.8 57 91.2
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 5.9e-17 94.4 235 28.5
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 7.8e-17 94.0 190 31.1
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 1.0e-16 93.6 235 27.2
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 1.7e-16 92.8 195 29.7
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 1.7e-16 92.8 235 27.7
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 2.3e-16 92.4 197 30.5
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 3.9e-16 91.7 178 30.3
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 8.6e-16 90.5 539 51.0
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.1e-15 90.1 239 31.0
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.1e-15 90.1 537 50.7
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 1.9e-15 89.4 240 30.4
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 5.6e-15 87.8 227 27.8
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 7.3e-15 87.4 555 40.5
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 7.3e-15 87.4 197 31.5
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.2e-14 86.7 238 31.9
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 1.2e-14 86.7 547 47.5
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 1.6e-14 86.3 159 28.3
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 3.6e-14 85.1 229 26.2
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 3.6e-14 85.1 176 34.1
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 3.6e-14 85.1 163 31.3
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 3.6e-14 85.1 223 26.9
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 4.7e-14 84.7 248 27.4
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 4.7e-14 84.7 190 27.4
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 4.7e-14 84.7 235 25.5
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 1.0e-13 83.6 213 26.3
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.3e-13 82.4 174 29.9
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.3e-13 82.4 174 32.8
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.3e-13 82.4 232 26.7
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 2.3e-13 82.4 550 49.8
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 3.1e-13 82.0 241 30.7
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 3.1e-13 82.0 241 30.7
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 5.2e-13 81.3 205 29.3
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 8.9e-13 80.5 237 29.1
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 3.4e-12 78.6 177 29.4
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 1.3e-11 76.6 122 37.7
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.1e-10 73.6 148 34.5
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 2.4e-10 72.4 123 31.7
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 2.0e-09 69.3 122 34.4
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 7.8e-09 67.4 171 27.5
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.0e-08 67.0 177 35.0
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.3e-08 66.6 169 36.1
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.3e-08 66.6 200 27.0
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 3.0e-08 65.5 166 30.1
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 3.9e-08 65.1 168 31.5
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 1.1e-07 63.5 117 29.1
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 2.5e-07 62.4 165 32.1
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 3.3e-07 62.0 142 31.7
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 1.6e-06 59.7 168 28.0
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 6.2e-06 57.8 133 32.3
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 6.2e-06 57.8 134 30.6
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 8.1e-06 57.4 133 31.6


User provided reference genes

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