Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.7e-249 865.5 440 100.0
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.2e-147 525.4 367 73.8
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.9e-94 350.5 367 48.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.5e-93 346.3 376 50.5
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.2e-90 337.8 366 50.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.2e-90 337.8 364 50.0
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.1e-89 334.7 396 48.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.4e-89 334.3 394 48.2
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 6.8e-89 332.0 414 45.2
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.5e-88 330.9 372 48.9
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.7e-87 327.4 370 48.4
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.7e-87 327.4 386 47.4
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.2e-87 327.0 365 49.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.9e-87 325.9 365 47.4
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.1e-86 324.7 419 45.1
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.4e-86 324.3 377 48.8
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.9e-86 323.9 365 47.1
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 9.2e-86 321.6 387 46.5
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 9.2e-86 321.6 365 49.0
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-85 320.9 419 45.3
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.1e-85 320.5 365 49.0
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.1e-85 320.5 421 45.6
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.0e-84 318.2 376 47.1
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.0e-84 318.2 372 45.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.3e-84 317.8 423 43.7
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.7e-84 317.4 366 47.3
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.7e-84 317.4 370 47.8
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.3e-84 317.0 364 45.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 8.6e-84 315.1 368 48.4
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.9e-83 313.9 370 47.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.3e-83 312.8 370 47.3
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.3e-83 312.8 403 43.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 5.6e-83 312.4 378 44.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 5.6e-83 312.4 369 45.5
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 5.6e-83 312.4 360 47.8
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.3e-83 312.0 373 45.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 7.3e-83 312.0 383 45.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-82 311.2 391 47.1
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.1e-82 310.5 388 46.1
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.8e-82 310.1 401 45.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 3.6e-82 309.7 366 47.3
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 6.2e-82 308.9 427 44.5
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.4e-81 307.8 365 46.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.4e-81 307.8 362 46.4
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.4e-81 307.0 373 45.6
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.4e-81 307.0 458 41.3
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.4e-81 307.0 413 44.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.1e-81 306.6 406 44.1
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 4.0e-81 306.2 367 46.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.0e-81 306.2 365 47.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 5.2e-81 305.8 390 45.9
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.8e-81 305.4 368 45.9
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 6.8e-81 305.4 383 46.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 6.8e-81 305.4 431 44.1
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.5e-80 304.3 428 43.7
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.6e-80 303.5 385 43.9
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 4.4e-80 302.8 421 43.5
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.6e-80 302.0 438 44.1
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.7e-79 300.8 379 47.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.2e-79 300.4 366 47.3
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.8e-79 299.7 360 46.1
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.9e-79 299.3 437 43.5
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.9e-79 299.3 437 43.5
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.4e-79 298.9 372 46.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.4e-79 298.9 379 47.0
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.4e-79 298.5 379 46.7
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.1e-78 298.1 381 43.0
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 4.2e-78 296.2 375 45.1
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 7.1e-78 295.4 382 45.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 7.1e-78 295.4 429 44.1
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.6e-77 294.3 365 45.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.1e-77 293.9 377 45.1
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-77 293.9 366 44.5
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.1e-77 293.9 394 44.7
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.7e-77 293.5 375 44.5
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.0e-76 291.6 308 50.3
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.3e-76 291.2 349 45.0
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.7e-76 290.8 379 43.8
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 5.1e-76 289.3 391 42.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 5.1e-76 289.3 354 42.1
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 6.6e-76 288.9 470 39.1
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 8.7e-76 288.5 441 40.4
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 3.3e-75 286.6 455 41.3
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 7.3e-75 285.4 377 43.2
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 9.6e-75 285.0 403 43.2
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.3e-74 284.6 369 44.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.6e-74 284.3 444 39.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 2.8e-74 283.5 372 44.1
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.6e-74 283.1 375 42.4
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.1e-73 281.6 368 46.5
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.1e-73 281.6 438 40.0
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.4e-73 281.2 378 42.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.4e-73 280.4 376 42.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 3.1e-73 280.0 376 41.2
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.1e-73 280.0 436 38.8
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 5.3e-73 279.3 367 44.7
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.9e-73 278.9 379 42.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.2e-72 278.1 388 44.3
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.4e-72 276.2 369 42.5
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.4e-72 276.2 372 42.2
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.8e-72 275.8 395 41.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.4e-71 272.3 414 40.1
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 4.2e-70 269.6 278 50.4
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 4.2e-70 269.6 303 47.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 9.3e-70 268.5 382 41.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.6e-69 267.7 372 41.7
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.7e-69 266.9 446 41.0
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.7e-69 266.9 378 39.4
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 6.0e-69 265.8 436 38.8
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 7.9e-69 265.4 447 40.9
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 7.9e-69 265.4 411 41.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.0e-68 265.0 413 41.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.0e-68 265.0 369 40.9
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.3e-68 264.6 375 44.5
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.7e-68 264.2 501 34.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.3e-68 263.8 375 44.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 5.1e-68 262.7 437 38.9
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.5e-67 261.2 369 42.0
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.5e-67 260.4 368 41.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.3e-66 258.1 407 40.8
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.6e-66 257.7 369 40.4
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.8e-66 256.9 366 41.3
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.1e-66 255.4 366 41.0
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 2.4e-65 253.8 378 40.2
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.1e-65 253.4 418 39.0
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.1e-65 253.4 306 47.1
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-64 251.5 376 40.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.6e-64 250.4 375 39.7
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 9.9e-64 248.4 401 36.9
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.4e-63 245.7 312 44.2
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.4e-62 244.6 378 40.2
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 5.4e-62 242.7 238 53.8
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 7.1e-62 242.3 225 56.4
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 4.6e-61 239.6 362 41.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-60 238.4 335 41.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.8e-60 237.7 338 42.3
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.9e-60 236.5 406 39.7
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 8.7e-60 235.3 396 37.1
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.5e-59 234.6 374 39.3
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.4e-59 232.3 312 42.3
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.8e-58 229.6 271 46.5
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.8e-58 229.6 312 44.2
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.1e-57 226.9 330 40.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.0e-57 226.5 303 40.9
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.3e-57 226.1 361 39.3
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.6e-56 223.8 368 39.1
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.1e-54 218.4 269 47.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.5e-53 213.4 280 42.9
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.9e-51 207.6 257 42.8
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.7e-50 203.4 293 38.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.1e-49 200.3 359 37.6
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 6.9e-49 199.1 393 36.4
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.7e-47 194.5 221 50.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.5e-46 190.7 272 43.8
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 5.1e-44 183.0 226 44.2
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 6.7e-44 182.6 255 42.4
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.1e-43 181.8 199 49.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.8e-41 174.5 210 44.3
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.8e-41 174.5 132 61.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.1e-41 173.7 266 36.8
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 5.1e-36 156.4 259 37.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 6.7e-36 156.0 276 37.7
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.3e-35 153.3 139 55.4
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.6e-32 144.1 206 44.7
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.8e-28 131.3 396 28.3
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 6.7e-28 129.4 204 41.7
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 4.8e-26 123.2 201 36.8
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-22 112.1 183 42.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.9e-22 111.3 92 59.8
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 4.0e-20 103.6 195 35.9
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.5e-19 101.7 105 53.3
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.1e-13 79.7 78 51.3
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.1e-13 79.7 80 52.5
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 5.2e-12 76.6 72 50.0
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 8.8e-12 75.9 56 62.5
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.2e-06 57.4 52 57.7


User provided reference genes

Program Settings