Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 9.5e-119 430.3 227 100.0
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.1e-77 293.9 219 72.6
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 3.1e-77 292.4 231 69.7
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 5.3e-37 158.7 209 46.9
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 2.6e-31 139.8 244 43.0
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 3.4e-31 139.4 231 41.1
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 5.7e-31 138.7 208 41.8
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 2.8e-30 136.3 230 41.7
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.8e-30 136.3 220 41.8
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 3.7e-30 136.0 232 41.8
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 8.3e-30 134.8 235 40.0
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 8.3e-30 134.8 210 40.5
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 1.1e-29 134.4 231 42.4
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 1.8e-29 133.7 165 47.9
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.8e-29 133.7 220 41.4
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 4.1e-29 132.5 221 42.1
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 7.0e-29 131.7 238 39.9
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 2.7e-28 129.8 224 43.8
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 7.7e-28 128.3 213 39.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 7.7e-28 128.3 190 43.2
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.3e-27 127.5 222 39.6
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 3.8e-27 125.9 234 38.9
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 5.0e-27 125.6 217 42.9
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 6.5e-27 125.2 235 37.4
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 6.5e-27 125.2 229 39.7
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.5e-26 124.0 194 39.7
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.9e-26 123.6 193 39.9
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.9e-26 123.6 206 40.3
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.5e-26 123.2 228 40.8
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 2.5e-26 123.2 208 41.3
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 2.5e-26 123.2 200 43.0
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 4.2e-26 122.5 164 46.3
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 4.2e-26 122.5 145 49.0
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 7.2e-26 121.7 243 35.4
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 9.4e-26 121.3 228 42.1
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 1.2e-25 120.9 198 40.4
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.2e-25 120.9 206 39.3
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 1.6e-25 120.6 200 43.0
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 1.6e-25 120.6 234 38.0
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 4.7e-25 119.0 243 36.2
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 6.1e-25 118.6 224 37.1
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 6.1e-25 118.6 224 39.7
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 6.1e-25 118.6 233 38.6
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 8.0e-25 118.2 224 39.7
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 8.0e-25 118.2 224 39.7
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.0e-24 117.9 232 40.5
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.8e-24 117.1 219 36.5
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 2.3e-24 116.7 233 38.2
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 3.0e-24 116.3 214 37.4
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 6.8e-24 115.2 232 39.7
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 6.8e-24 115.2 159 47.8
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 6.8e-24 115.2 229 40.2
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 1.2e-23 114.4 233 36.5
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.5e-23 114.0 204 41.2
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 3.4e-23 112.8 235 35.7
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 5.7e-23 112.1 237 36.7
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 7.5e-23 111.7 249 36.5
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 9.8e-23 111.3 210 38.1
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 1.3e-22 110.9 213 36.2
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 2.2e-22 110.2 228 39.0
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 2.2e-22 110.2 159 45.9
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 8.3e-22 108.2 199 37.2
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.1e-21 107.8 217 36.4
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.1e-21 107.8 234 39.3
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.4e-21 107.5 190 37.4
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 1.8e-21 107.1 234 35.9
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 1.8e-21 107.1 182 41.8
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 1.8e-21 107.1 272 32.7
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 2.4e-21 106.7 242 34.7
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 4.1e-21 105.9 206 38.3
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 5.4e-21 105.5 229 33.2
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 1.6e-20 104.0 170 36.5
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 2.0e-20 103.6 196 37.8
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 2.0e-20 103.6 109 50.5
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 2.7e-20 103.2 109 50.5
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.7e-20 103.2 172 41.3
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 2.7e-20 103.2 230 34.3
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 2.7e-20 103.2 197 37.6
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 4.5e-20 102.4 229 36.2
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 5.9e-20 102.1 227 35.2
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.0e-19 101.3 249 34.5
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 1.3e-19 100.9 215 37.2
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 1.7e-19 100.5 191 38.2
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.9e-19 99.8 193 37.8
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 3.8e-19 99.4 215 36.7
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 5.0e-19 99.0 220 36.8
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 6.6e-19 98.6 269 32.7
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 8.6e-19 98.2 227 35.7
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 8.6e-19 98.2 214 34.1
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 3.3e-18 96.3 214 34.1
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 4.3e-18 95.9 113 45.1
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 5.6e-18 95.5 214 35.5
Zm00001eb094360 Zea mays HOM05D001216 ORTHO05D005688 7.2e-18 95.1 47 93.6
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 1.2e-17 94.4 222 34.2
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 1.2e-17 94.4 220 35.9
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 1.6e-17 94.0 224 33.0
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.6e-17 94.0 214 35.5
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.1e-17 93.6 224 33.9
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 4.7e-17 92.4 198 36.4
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 8.0e-17 91.7 153 38.6
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 8.0e-17 91.7 211 34.6
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 1.0e-16 91.3 215 35.3
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 1.0e-16 91.3 229 35.4
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.4e-16 90.9 231 34.6
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.8e-16 90.5 221 33.0
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 8.9e-16 88.2 225 34.7
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 7.5e-15 85.1 225 33.8
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 2.9e-14 83.2 86 45.3
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 3.2e-13 79.7 221 32.1
Zm00001eb276770 Zea mays HOM05D001216 ORTHO05D005688 5.4e-13 79.0 41 87.8
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 4.6e-12 75.9 163 35.0
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 4.6e-12 75.9 235 29.8
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 7.8e-12 75.1 180 35.0
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 1.0e-11 74.7 223 30.0
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 1.7e-11 73.9 196 32.7
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 3.0e-11 73.2 159 34.6
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.9e-11 72.8 155 33.5
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 3.9e-11 72.8 230 31.7
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 5.0e-11 72.4 155 31.0
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 6.6e-11 72.0 215 27.9
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 6.8e-08 62.0 66 53.0
HPP92_000268 Vanilla planifolia HOM05D005900 ORTHO05D007306 5.8e-07 58.9 146 39.0
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 9.8e-07 58.2 160 30.6
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.2e-06 57.0 142 34.5
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.9e-06 56.6 165 32.1
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 4.9e-06 55.8 251 28.7


User provided reference genes

Program Settings