Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 9.2e-56 219.9 107 100.0
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 6.0e-47 190.7 107 83.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.8e-36 155.2 85 85.9
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.3e-33 146.4 107 63.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 3.0e-30 135.2 107 56.1
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 55.1
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.5e-26 122.9 107 50.5
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 52.8
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.6e-26 122.1 107 50.5
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.3e-25 119.8 107 49.5
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 51.9
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 2.2e-25 119.0 107 51.4
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 52.8
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.9e-25 118.6 107 49.5
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 3.8e-25 118.2 107 49.5
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 4.9e-25 117.9 107 54.2
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 6.4e-25 117.5 107 47.7
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 6.4e-25 117.5 107 51.4
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 6.4e-25 117.5 108 50.9
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.4e-25 117.5 107 53.3
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 6.4e-25 117.5 108 51.9
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 8.4e-25 117.1 107 49.5
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 8.4e-25 117.1 107 49.5
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 8.4e-25 117.1 107 49.5
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 8.4e-25 117.1 67 82.1
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 8.4e-25 117.1 67 82.1
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.1e-24 116.7 107 47.7
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.1e-24 116.7 107 49.5
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.4e-24 116.3 108 49.1
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.4e-24 116.3 108 49.1
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.4e-24 116.3 108 50.9
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.9e-24 115.9 108 46.3
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.9e-24 115.9 108 50.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.4e-24 115.5 107 47.7
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.4e-24 115.5 107 47.7
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.4e-24 115.5 107 48.6
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 3.2e-24 115.2 108 50.9
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 4.2e-24 114.8 107 48.6
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.2e-24 114.8 108 51.9
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 4.2e-24 114.8 107 50.5
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.4e-24 114.4 107 45.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 5.4e-24 114.4 108 49.1
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 5.4e-24 114.4 108 46.3
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.4e-24 114.4 108 53.7
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.4e-24 114.4 108 49.1
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 7.1e-24 114.0 108 50.0
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 7.1e-24 114.0 107 47.7
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 9.3e-24 113.6 107 51.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 9.3e-24 113.6 108 50.9
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-23 113.2 109 50.5
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.2e-23 113.2 108 55.6
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.2e-23 113.2 107 48.6
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.2e-23 113.2 107 52.3
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.6e-23 112.8 107 51.4
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.6e-23 112.8 108 49.1
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.6e-23 112.8 108 49.1
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 2.1e-23 112.5 107 48.6
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 2.1e-23 112.5 107 48.6
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 2.1e-23 112.5 107 46.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.5e-23 111.7 107 46.7
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.5e-23 111.7 108 50.9
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 4.6e-23 111.3 109 47.7
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 4.6e-23 111.3 108 50.0
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 4.6e-23 111.3 107 44.9
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 4.6e-23 111.3 107 47.7
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 6.0e-23 110.9 107 45.8
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 6.0e-23 110.9 108 50.0
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 7.9e-23 110.5 107 47.7
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 7.9e-23 110.5 107 47.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 7.9e-23 110.5 107 50.5
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.0e-22 110.2 108 49.1
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.0e-22 110.2 107 47.7
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.3e-22 109.8 107 47.7
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.3e-22 109.8 108 49.1
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.3e-22 109.8 104 49.0
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.3e-22 109.8 107 46.7
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 3.0e-22 108.6 108 48.1
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 3.0e-22 108.6 107 43.0
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.9e-22 108.2 107 47.7
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 3.9e-22 108.2 107 48.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 3.9e-22 108.2 106 47.2
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 3.9e-22 108.2 107 48.6
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.1e-22 107.8 108 47.2
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 5.1e-22 107.8 108 46.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 5.1e-22 107.8 107 46.7
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 5.1e-22 107.8 107 43.0
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 8.7e-22 107.1 107 43.9
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 8.7e-22 107.1 108 48.1
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 8.7e-22 107.1 107 45.8
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.1e-21 106.7 108 48.1
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.5e-21 106.3 107 43.0
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.5e-21 106.3 108 49.1
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.5e-21 106.3 108 49.1
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-21 106.3 108 47.2
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.9e-21 105.9 108 44.4
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.9e-21 105.9 107 47.7
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.9e-21 105.9 107 46.7
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.3e-21 105.1 107 44.9
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 4.3e-21 104.8 108 48.1
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 5.6e-21 104.4 108 46.3
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 5.6e-21 104.4 107 44.9
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 9.6e-21 103.6 107 43.0
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 9.6e-21 103.6 107 42.1
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 9.6e-21 103.6 107 46.7
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.3e-20 103.2 107 46.7
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.6e-20 102.8 107 42.1
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.1e-20 102.4 108 42.6
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.8e-20 101.3 107 45.8
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 4.8e-20 101.3 87 54.0
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 4.8e-20 101.3 106 42.5
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 8.1e-20 100.5 108 46.3
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.1e-19 100.1 107 41.1
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.8e-19 99.4 104 44.2
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.8e-19 99.4 107 44.9
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 2.4e-19 99.0 108 44.4
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 4.0e-19 98.2 108 42.6
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 4.0e-19 98.2 107 43.9
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 5.3e-19 97.8 106 43.4
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 5.3e-19 97.8 111 41.4
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 9.0e-19 97.1 107 40.2
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.0e-18 95.9 107 38.3
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 5.8e-18 94.4 94 46.8
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 7.6e-18 94.0 85 49.4
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 9.9e-18 93.6 98 45.9
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.2e-17 92.4 95 45.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 2.9e-17 92.0 90 45.6
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 8.4e-17 90.5 86 46.5
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.1e-16 90.1 103 42.7
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 3.2e-16 88.6 85 47.1
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 7.1e-16 87.4 82 46.3
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 9.3e-16 87.0 110 42.7
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 9.3e-16 87.0 85 43.5
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.6e-15 86.3 82 46.3
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 2.1e-15 85.9 103 36.9
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.7e-15 85.5 85 45.9
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.5e-15 85.1 99 39.4
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 4.6e-15 84.7 86 46.5
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 4.6e-15 84.7 95 45.3
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 4.6e-15 84.7 95 45.3
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 4.6e-15 84.7 85 44.7
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 4.6e-15 84.7 86 46.5
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.3e-14 83.2 86 47.7
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.8e-14 82.8 99 39.4
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.3e-14 82.4 85 45.9
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 3.9e-14 81.6 87 49.4
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 8.7e-14 80.5 107 38.3
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.1e-13 80.1 90 41.1
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.9e-13 79.3 86 45.3
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.9e-13 79.3 83 45.8
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 3.7e-12 75.1 71 45.1
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.1e-11 73.6 82 43.9
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 5.3e-11 71.2 85 42.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 7.6e-10 67.4 65 44.6
Zm00001eb011350 Zea mays HOM05D001168 ORTHO05D001044 7.6e-10 67.4 33 90.9
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.4e-08 63.2 109 29.4
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.5e-08 62.4 87 35.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 7.9e-07 57.4 112 33.9


User provided reference genes

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