Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb127550 Zea mays HOM05D004630 ORTHO05D005727 2.4e-229 798.5 408 100.0
Os10g0170300 Oryza sativa ssp. japonica HOM05D004630 ORTHO05D005727 1.1e-152 543.9 413 69.7
MBI05_g35190_MAGBIO Magnolia biondii HOM05D004630 ORTHO05D005727 5.7e-106 388.7 367 56.7
PSO210G5682 Papaver somniferum HOM05D004630 ORTHO05D005727 6.5e-102 375.2 391 53.2
Nn7g38087 Nelumbo nucifera HOM05D004630 ORTHO05D005727 2.5e-101 373.2 392 51.8
MD13G1136600 Malus domestica HOM05D004630 ORTHO05D005727 4.2e-101 372.5 391 53.7
Ciclev10018715m.g Citrus clementina HOM05D004630 ORTHO05D005727 2.1e-100 370.2 380 53.9
MD16G1131900 Malus domestica HOM05D004630 ORTHO05D005727 1.8e-99 367.1 412 51.2
Prupe.1G208800 Prunus persica HOM05D004630 ORTHO05D005727 4.0e-99 365.9 392 52.8
TAR636G2703 Trochodendron aralioides HOM05D004630 ORTHO05D005727 5.2e-99 365.5 400 51.8
GSVIVG01034228001 Vitis vinifera HOM05D004630 ORTHO05D005727 8.8e-99 364.8 370 53.2
Hma1.2p1_0482F.1_g162689 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 1.5e-98 364.0 407 49.9
Potri.003G059300 Populus trichocarpa HOM05D004630 ORTHO05D005727 2.0e-98 363.6 376 55.3
FvH4_4g21830 Fragaria vesca HOM05D004630 ORTHO05D005727 2.6e-98 363.2 381 52.8
Lj9C588T4 Lonicera japonica HOM05D004630 ORTHO05D005727 3.4e-98 362.8 397 51.4
Atru.chr1.2080 Acer truncatum HOM05D004630 ORTHO05D005727 2.2e-97 360.1 387 52.2
Manes.11G127500 Manihot esculenta HOM05D004630 ORTHO05D005727 2.2e-97 360.1 402 51.2
Sed0000779 Sechium edule HOM05D004630 ORTHO05D005727 2.2e-97 360.1 377 53.1
CSS0039221 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 3.7e-97 359.4 376 52.1
Aqoxy7G01739 Aquilegia oxysepala HOM05D004630 ORTHO05D005727 6.3e-97 358.6 378 53.4
VMungo1215G1222 Vigna mungo HOM05D004630 ORTHO05D005727 8.3e-97 358.2 390 51.5
RcHm_v2.0_Chr4g0428061 Rosa chinensis HOM05D004630 ORTHO05D005727 1.1e-96 357.8 413 51.6
Medtr4g123557 Medicago truncatula HOM05D004630 ORTHO05D005727 1.4e-96 357.5 379 51.7
Phvul.003G124900 Phaseolus vulgaris HOM05D004630 ORTHO05D005727 1.2e-95 354.4 409 48.7
Cfa003362 Carpinus fangiana HOM05D004630 ORTHO05D005727 3.5e-95 352.8 391 50.9
Psat4g020520 Pisum sativum HOM05D004630 ORTHO05D005727 3.5e-95 352.8 381 52.0
COL.COLO4_38353 Corchorus olitorius HOM05D004630 ORTHO05D005727 1.0e-94 351.3 410 50.0
Thecc.07G164200 Theobroma cacao HOM05D004630 ORTHO05D005727 1.0e-94 351.3 369 54.7
QL02p088183 Quercus lobata HOM05D004630 ORTHO05D005727 1.3e-94 350.9 367 53.1
Duzib187G1410 Durio zibethinus HOM05D004630 ORTHO05D005727 2.2e-94 350.1 369 53.9
Eucgr.B01002 Eucalyptus grandis HOM05D004630 ORTHO05D005727 5.0e-94 349.0 400 52.0
Glyma.13G116800 Glycine max HOM05D004630 ORTHO05D005727 6.5e-94 348.6 390 49.5
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 6.5e-94 348.6 380 50.3
Nitab4.5_0004432g0030 Nicotiana tabacum HOM05D004630 ORTHO05D005727 8.5e-94 348.2 381 49.3
Ca_21358_v3 Cicer arietinum L. HOM05D004630 ORTHO05D005727 1.1e-93 347.8 380 50.8
Sopen07g005480 Solanum pennellii HOM05D004630 ORTHO05D005727 1.1e-93 347.8 370 49.5
arahy.Tifrunner.gnm1.ann1.N7874Q Arachis hypogaea HOM05D004630 ORTHO05D005727 1.5e-93 347.4 394 49.0
CiPaw.04G170700 Carya illinoinensis HOM05D004630 ORTHO05D005727 1.5e-93 347.4 379 50.9
arahy.Tifrunner.gnm1.ann1.W5Q7UV Arachis hypogaea HOM05D004630 ORTHO05D005727 1.9e-93 347.1 394 48.7
CANSAT11G0088 Cannabis sativa HOM05D004630 ORTHO05D005727 4.2e-93 345.9 411 48.4
MSTRG.13783 Avicennia marina HOM05D004630 ORTHO05D005727 5.5e-93 345.5 403 47.6
AUR62019782 Chenopodium quinoa HOM05D004630 ORTHO05D005727 1.6e-92 344.0 366 50.5
Dinv43828 Davidia involucrata HOM05D004630 ORTHO05D005727 2.1e-92 343.6 405 48.4
Gohir.A01G096700 Gossypium hirsutum HOM05D004630 ORTHO05D005727 2.1e-92 343.6 367 54.2
Lj4g0015635 Lotus japonicus HOM05D004630 ORTHO05D005727 2.1e-92 343.6 379 50.7
PGSC0003DMG400020700 Solanum tuberosum HOM05D004630 ORTHO05D005727 2.7e-92 343.2 369 49.3
CAN.G689.26 Capsicum annuum HOM05D004630 ORTHO05D005727 3.6e-92 342.8 376 49.7
Oeu028192.1 Olea europaea HOM05D004630 ORTHO05D005727 8.0e-92 341.7 398 48.2
Gohir.D01G081000 Gossypium hirsutum HOM05D004630 ORTHO05D005727 1.0e-91 341.3 367 54.0
ClCG03G006320 Citrullus lanatus HOM05D004630 ORTHO05D005727 1.4e-91 340.9 410 49.8
Lalb_Chr12g0200461 Lupinus albus HOM05D004630 ORTHO05D005727 1.8e-91 340.5 397 48.4
Actinidia21906 Actinidia chinensis HOM05D004630 ORTHO05D005727 6.8e-91 338.6 367 51.0
EL10Ac5g12859 Beta vulgaris HOM05D004630 ORTHO05D005727 2.0e-90 337.0 409 47.2
DCAR_009035 Daucus carota HOM05D004630 ORTHO05D005727 7.5e-90 335.1 383 50.1
CsaV3_1G037410 Cucumis sativus L. HOM05D004630 ORTHO05D005727 9.8e-90 334.7 408 48.5
Migut.N03011 Erythranthe guttata HOM05D004630 ORTHO05D005727 1.7e-89 334.0 371 48.2
AUR62010786 Chenopodium quinoa HOM05D004630 ORTHO05D005727 2.8e-89 333.2 370 50.5
SalBow6G4274 Salvia bowleyana HOM05D004630 ORTHO05D005727 8.3e-89 331.6 397 47.4
AL6G28300 Arabidopsis lyrata HOM05D004630 ORTHO05D005727 1.1e-88 331.3 378 47.1
Thhalv10012592m.g Eutrema salsugineum HOM05D004630 ORTHO05D005727 1.1e-88 331.3 377 46.9
Cc03_g11340 Coffea canephora HOM05D004630 ORTHO05D005727 1.8e-88 330.5 381 48.6
MELO3C002801.2 Cucumis melo HOM05D004630 ORTHO05D005727 4.1e-88 329.3 412 47.8
Sp6g26980 Schrenkiella parvula HOM05D004630 ORTHO05D005727 4.1e-88 329.3 377 47.7
SalBow2G2706 Salvia bowleyana HOM05D004630 ORTHO05D005727 7.0e-88 328.6 368 49.5
BcaB08g36795 Brassica carinata HOM05D004630 ORTHO05D005727 1.2e-87 327.8 390 46.4
Lsat_1_v5_gn_8_137620 Lactuca sativa HOM05D004630 ORTHO05D005727 1.6e-87 327.4 399 46.9
Carub.0006s1544 Capsella rubella HOM05D004630 ORTHO05D005727 2.0e-87 327.0 377 46.9
Sabra03G0033900 Salix brachista HOM05D004630 ORTHO05D005727 2.0e-87 327.0 372 50.8
AT5G17250 Arabidopsis thaliana HOM05D004630 ORTHO05D005727 2.7e-87 326.6 378 46.8
Haze_25597 Corylus avellana HOM05D004630 ORTHO05D005727 2.7e-87 326.6 433 45.7
SalBow7G2764 Salvia bowleyana HOM05D004630 ORTHO05D005727 2.7e-87 326.6 368 49.2
THA.LOC104820866 Tarenaya hassleriana HOM05D004630 ORTHO05D005727 4.5e-87 325.9 377 48.3
HanXRQChr17g0554761 Helianthus annuus HOM05D004630 ORTHO05D005727 1.7e-86 323.9 367 48.2
BcaC04g18817 Brassica carinata HOM05D004630 ORTHO05D005727 3.8e-86 322.8 392 48.2
A10p22150 Brassica napus HOM05D004630 ORTHO05D005727 3.8e-86 322.8 392 47.7
C09p59940 Brassica napus HOM05D004630 ORTHO05D005727 3.8e-86 322.8 392 48.2
BolC9t58830H Brassica oleracea HOM05D004630 ORTHO05D005727 3.8e-86 322.8 392 48.2
Gorai.002G105900 Gossypium raimondii HOM05D004630 ORTHO05D005727 1.9e-85 320.5 420 47.4
Hund12270 Selenicereus undatus HOM05D004630 ORTHO05D005727 2.5e-85 320.1 407 44.2
Rhsim05G0234800 Rhododendron simsii HOM05D004630 ORTHO05D005727 5.5e-85 318.9 366 48.6
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 5.5e-85 318.9 420 46.2
CARHR195960 Cardamine hirsuta HOM05D004630 ORTHO05D005727 7.2e-85 318.5 377 45.9
BraA10t44274Z Brassica rapa HOM05D004630 ORTHO05D005727 9.5e-85 318.2 392 47.2
CSS0009392 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 9.5e-85 318.2 377 47.7
Ah.12g052160 Amaranthus hybridus HOM05D004630 ORTHO05D005727 1.5e-82 310.8 409 46.2
PGR031G0128 Punica granatum HOM05D004630 ORTHO05D005727 5.7e-82 308.9 433 44.8
Aa31LG11G12420 Aethionema arabicum HOM05D004630 ORTHO05D005727 1.3e-81 307.8 396 45.7
ATR0019G053 Amborella trichopoda HOM05D004630 ORTHO05D005727 1.8e-80 303.9 489 38.9
SHI11357 Sapria himalayana HOM05D004630 ORTHO05D005727 4.1e-80 302.8 366 45.6
FAN07G0643 Fragaria x ananassa HOM05D004630 ORTHO05D005727 8.6e-78 295.0 381 46.2
Solyc07g014610.4 Solanum lycopersicum HOM05D004630 ORTHO05D005727 1.2e-76 291.2 370 44.6
Peaxi162Scf00341g00622 Petunia axillaris HOM05D004630 ORTHO05D005727 4.6e-71 272.7 382 42.1
HPP92_010565 Vanilla planifolia HOM05D004630 ORTHO05D005727 2.5e-69 266.9 244 57.4
vmacro00088 Vaccinium macrocarpon HOM05D004630 ORTHO05D005727 4.0e-67 259.6 515 34.8
FAN12G0960 Fragaria x ananassa HOM05D004630 ORTHO05D005727 2.0e-66 257.3 381 42.8
Rhsim10G0128800 Rhododendron simsii HOM05D004630 ORTHO05D005727 3.0e-62 243.4 401 39.9
Pp3c19_7340 Physcomitrium patens HOM05D004630 ORTHO05D005727 3.9e-62 243.0 302 43.0
Migut.O00493 Erythranthe guttata HOM05D004630 ORTHO05D005727 3.7e-57 226.5 286 44.8
unitig_578.g16518 Utricularia gibba HOM05D004630 ORTHO05D005727 8.3e-57 225.3 246 49.6
Mapoly0027s0070 Marchantia polymorpha HOM05D004630 ORTHO05D005727 3.5e-55 219.9 295 41.7
Nitab4.5_0000848g0070 Nicotiana tabacum HOM05D004630 ORTHO05D005727 1.9e-53 214.2 302 41.7
Hma1.2p1_1944F.1_g308560 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 2.5e-53 213.8 292 44.2
ECA233G6037 Erigeron canadensis HOM05D004630 ORTHO05D005727 3.6e-52 209.9 165 61.8
SalBow5G1401 Salvia bowleyana HOM05D004630 ORTHO05D005727 4.7e-52 209.5 366 35.8
HPP92_010575 Vanilla planifolia HOM05D004630 ORTHO05D005727 8.9e-51 205.3 299 45.5
AagrBONN_evm.TU.Sc2ySwM_344.4351 Anthoceros agrestis HOM05D004630 ORTHO05D005727 2.6e-50 203.8 282 39.7
CBR_g31522 Chara braunii HOM05D004630 ORTHO05D005727 1.0e-46 191.8 409 32.3
TPR.G34395 Trifolium pratense HOM05D004630 ORTHO05D005727 1.1e-45 188.3 132 67.4
SMO116G0486 Selaginella moellendorffii HOM05D004630 ORTHO05D005727 9.6e-45 185.3 328 38.1
Hma1.2p1_0482F.1_g162686 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 2.1e-44 184.1 266 42.9
Actinidia21669 Actinidia chinensis HOM05D004630 ORTHO05D005727 2.8e-44 183.7 252 44.0
CDE08G0728 Ceratophyllum demersum HOM05D004630 ORTHO05D005727 1.8e-43 181.0 130 66.2
TPR.G12666 Trifolium pratense HOM05D004630 ORTHO05D005727 1.4e-40 171.4 242 42.6
Cpa.g.sc80.32 Carica papaya HOM05D004630 ORTHO05D005727 7.1e-32 142.5 243 39.5
Actinidia37297 Actinidia chinensis HOM05D004630 ORTHO05D005727 7.4e-29 132.5 266 38.3
SEGI_08197 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 9.6e-29 132.1 107 57.9
FAN12G2264 Fragaria x ananassa HOM05D004630 ORTHO05D005727 6.5e-25 119.4 81 67.9
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 7.1e-24 115.9 343 27.4
HPP92_010574 Vanilla planifolia HOM05D004630 ORTHO05D005727 1.2e-23 115.2 77 75.3
ECA233G2342 Erigeron canadensis HOM05D004630 ORTHO05D005727 2.7e-23 114.0 203 36.5
Nitab4.5_0000848g0060 Nicotiana tabacum HOM05D004630 ORTHO05D005727 4.6e-23 113.2 85 64.7
Cre02.g094050 Chlamydomonas reinhardtii HOM05D004630 ORTHO05D005727 3.0e-22 110.5 414 26.6
Actinidia28193 Actinidia chinensis HOM05D004630 ORTHO05D005727 6.9e-19 99.4 165 40.6
Cpa.g.sc80.35 Carica papaya HOM05D004630 ORTHO05D005727 2.9e-17 94.0 74 59.5
SEGI_25015 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 3.8e-17 93.6 300 29.7
SEGI_34684 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 3.8e-17 93.6 71 62.0
Ciclev10023873m.g Citrus clementina HOM05D004630 ORTHO05D005727 1.4e-16 91.7 56 75.0
ATR0221G001 Amborella trichopoda HOM05D004630 ORTHO05D005727 7.1e-16 89.4 112 42.9
HPP92_010566 Vanilla planifolia HOM05D004630 ORTHO05D005727 3.5e-15 87.0 112 50.9
Actinidia28194 Actinidia chinensis HOM05D004630 ORTHO05D005727 7.9e-15 85.9 60 63.3
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 2.3e-14 84.3 410 25.9
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 4.5e-10 70.1 354 26.0
Carub.0004s0170 Capsella rubella HOM05D006593 ORTHO05D008512 5.9e-10 69.7 354 23.4
Cpa.g.sc80.33 Carica papaya HOM05D004630 ORTHO05D005727 5.9e-10 69.7 63 55.6
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 2.9e-09 67.4 363 24.2
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 3.8e-09 67.0 346 23.4
THA.LOC104824911 Tarenaya hassleriana HOM05D006593 ORTHO05D008512 3.8e-09 67.0 343 23.9
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 5.0e-09 66.6 346 24.3
A09p57440 Brassica napus HOM05D006593 ORTHO05D008512 5.0e-09 66.6 354 23.7
BraA09t41136Z Brassica rapa HOM05D006593 ORTHO05D008512 5.0e-09 66.6 354 23.7
Cfa023376 Carpinus fangiana HOM05D004630 ORTHO05D005727 5.0e-09 66.6 336 23.2
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 5.0e-09 66.6 70 45.7
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 6.5e-09 66.2 338 26.0
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 1.4e-08 65.1 345 23.5
BolC8t51623H Brassica oleracea HOM05D006593 ORTHO05D008512 5.5e-08 63.2 356 21.6
AUR62017964 Chenopodium quinoa HOM05D006593 ORTHO05D008512 1.2e-07 62.0 353 24.4
CAN.G1843.3 Capsicum annuum HOM05D006593 ORTHO05D008512 1.6e-07 61.6 329 23.7
Sopen11g005350 Solanum pennellii HOM05D006593 ORTHO05D008512 1.6e-07 61.6 294 24.5
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 3.6e-07 60.5 351 23.1
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 4.6e-07 60.1 357 25.2
Solyc11g010550.2 Solanum lycopersicum HOM05D006593 ORTHO05D008512 6.1e-07 59.7 294 24.1
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 7.9e-07 59.3 325 20.9
Actinidia18517 Actinidia chinensis HOM05D004630 ORTHO05D005727 1.0e-06 58.9 54 51.9
CANSAT01G0713 Cannabis sativa HOM05D006593 ORTHO05D008512 1.0e-06 58.9 342 24.9
Potri.007G010600 Populus trichocarpa HOM05D006593 ORTHO05D008512 1.0e-06 58.9 350 24.0
Sp4g01570 Schrenkiella parvula HOM05D006593 ORTHO05D008512 1.0e-06 58.9 334 21.9
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 1.0e-06 58.9 273 23.1
AUR62003656 Chenopodium quinoa HOM05D006593 ORTHO05D008512 1.4e-06 58.5 336 24.1
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 1.4e-06 58.5 144 29.2
PGSC0003DMG400016138 Solanum tuberosum HOM05D006593 ORTHO05D008512 1.4e-06 58.5 294 23.5
CAN.G1724.3 Capsicum annuum HOM05D006593 ORTHO05D008512 1.8e-06 58.2 125 29.6
Duzib147G0804 Durio zibethinus HOM05D006593 ORTHO05D008512 2.3e-06 57.8 283 23.7
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 3.0e-06 57.4 143 28.7
BcaB08g35096 Brassica carinata HOM05D006593 ORTHO05D008512 3.9e-06 57.0 364 20.9
Ciclev10003755m.g Citrus clementina HOM05D006593 ORTHO05D008512 3.9e-06 57.0 284 23.6
BcaC07g41050 Brassica carinata HOM05D006593 ORTHO05D008512 5.1e-06 56.6 355 22.0
C08p40530 Brassica napus HOM05D006593 ORTHO05D008512 5.1e-06 56.6 355 22.0
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 5.1e-06 56.6 351 22.5
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 5.1e-06 56.6 144 30.6
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 5.1e-06 56.6 143 30.1
HanXRQChr17g0550591 Helianthus annuus HOM05D006593 ORTHO05D008512 6.7e-06 56.2 342 21.6
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 6.7e-06 56.2 143 28.7
DCAR_014189 Daucus carota HOM05D006593 ORTHO05D008512 8.8e-06 55.8 343 23.9
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 8.8e-06 55.8 347 24.8


User provided reference genes

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