Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 6.8e-40 166.8 79 100.0
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 1.9e-18 95.5 78 59.0
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 7.3e-18 93.6 70 61.4
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 2.1e-17 92.0 82 53.7
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 8.1e-17 90.1 79 51.9
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 8.1e-17 90.1 68 63.2
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 2.4e-16 88.6 78 52.6
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 3.1e-16 88.2 68 55.9
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 4.0e-16 87.8 80 51.2
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 5.3e-16 87.4 82 52.4
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 5.3e-16 87.4 69 59.4
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.2e-15 86.3 78 53.8
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.5e-15 85.9 72 52.8
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 2.0e-15 85.5 49 69.4
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 3.4e-15 84.7 82 50.0
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 3.4e-15 84.7 82 50.0
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 3.4e-15 84.7 82 50.0
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 4.5e-15 84.3 82 50.0
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.3e-14 82.8 64 51.6
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 1.7e-14 82.4 82 51.2
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 2.2e-14 82.0 80 48.8
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.2e-14 82.0 77 48.1
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.9e-14 81.6 81 50.6
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 4.9e-14 80.9 67 50.7
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 4.9e-14 80.9 70 55.7
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 4.9e-14 80.9 46 69.6
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.1e-13 79.7 66 54.5
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.1e-13 79.7 66 54.5
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 2.4e-13 78.6 65 55.4
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 2.4e-13 78.6 65 55.4
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 5.4e-13 77.4 85 47.1
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 65 50.8
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 3.5e-12 74.7 67 50.7
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.7e-11 70.1 78 46.2
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.7e-11 70.1 75 48.0
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 8.7e-11 70.1 74 47.3
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 1.1e-10 69.7 68 51.5
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.1e-10 69.7 78 46.2
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 1.9e-10 68.9 75 46.7
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 4.3e-10 67.8 74 47.3
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 4.3e-10 67.8 73 43.8
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 5.6e-10 67.4 63 47.6
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.6e-10 67.4 49 49.0
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 9.6e-10 66.6 75 46.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.3e-09 66.2 63 46.0
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.6e-09 65.9 68 48.5
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.1e-09 65.5 46 54.3
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 2.1e-09 65.5 75 45.3
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 2.1e-09 65.5 75 45.3
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.8e-09 65.1 75 46.7
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.8e-09 65.1 75 46.7
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 3.7e-09 64.7 73 45.2
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 4.8e-09 64.3 64 45.3
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.2e-09 63.9 77 44.2
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 6.2e-09 63.9 64 45.3
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 8.1e-09 63.5 76 46.1
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.1e-09 63.5 76 46.1
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 8.1e-09 63.5 48 50.0
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 8.1e-09 63.5 77 39.0
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.1e-08 63.2 74 43.2
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 1.1e-08 63.2 78 46.2
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.8e-08 62.4 57 50.9
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.4e-08 62.0 74 41.9
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-08 61.6 75 40.0
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-08 61.6 75 40.0
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 3.1e-08 61.6 63 41.3
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 3.1e-08 61.6 64 43.8
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 3.1e-08 61.6 68 45.6
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 4.0e-08 61.2 64 45.3
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 4.0e-08 61.2 48 56.2
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 5.3e-08 60.8 77 42.9
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 6.9e-08 60.5 77 45.5
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 9.0e-08 60.1 47 57.4
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 1.2e-07 59.7 49 49.0
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.5e-07 59.3 62 48.4
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.0e-07 58.9 77 42.9
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.0e-07 58.9 46 54.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.6e-07 58.5 63 47.6
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 2.6e-07 58.5 75 46.7
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 3.4e-07 58.2 60 48.3
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 5.8e-07 57.4 68 41.2
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 7.6e-07 57.0 73 38.4
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.3e-06 56.2 47 53.2
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 1.3e-06 56.2 64 46.9
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 1.7e-06 55.8 83 39.8
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.9e-06 55.1 64 48.4
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 6.4e-06 53.9 74 45.9
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 6.4e-06 53.9 73 41.1


User provided reference genes

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