Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 0.0e+00 2436.8 1241 100.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.1e-159 567.8 1299 32.8
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 5.1e-150 536.6 1240 31.9
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.4e-147 527.7 1241 30.9
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 7.5e-141 506.1 1238 30.4
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.8e-140 504.2 1245 29.2
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.4e-139 501.9 1242 30.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 5.3e-139 500.0 1243 30.2
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.0e-138 498.0 1245 29.5
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 7.7e-138 496.1 1257 30.8
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.7e-137 495.0 1256 30.8
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 7.2e-136 489.6 1239 29.7
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.6e-135 487.3 1259 30.3
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.8e-134 485.0 1250 29.2
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 5.2e-134 483.4 1251 29.3
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 2.0e-133 481.5 1239 29.6
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 6.3e-132 476.5 1246 30.3
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.3e-129 468.8 1247 29.7
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 2.9e-129 467.6 1229 29.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 1.6e-127 461.8 1234 29.2
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 2.1e-127 461.5 1234 29.3
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 3.6e-127 460.7 1247 29.7
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.6e-125 454.5 1068 30.3
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.4e-125 454.1 1234 28.5
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 5.7e-125 453.4 1238 29.2
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 2.8e-124 451.1 1217 28.9
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.1e-123 449.1 1232 28.0
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 5.4e-123 446.8 1271 28.8
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.2e-122 445.7 1280 29.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 4.5e-122 443.7 1253 28.7
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.0e-121 440.3 1248 27.7
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.3e-120 437.6 1247 28.3
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-119 435.3 1240 27.7
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.0e-118 432.6 1242 27.9
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 4.0e-118 430.6 1226 29.9
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 8.3e-116 422.9 1235 27.9
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.4e-115 422.2 1221 28.3
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.2e-114 419.1 1234 27.9
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.7e-113 415.2 1242 27.7
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 6.6e-113 413.3 1140 27.6
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 8.6e-113 412.9 1232 27.4
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 8.6e-113 412.9 1256 27.8
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.6e-113 412.9 1247 27.7
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.6e-113 412.9 1247 27.7
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.9e-112 411.8 1245 27.8
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 3.6e-111 407.5 1243 27.8
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.3e-108 399.1 1243 27.9
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.1e-107 396.0 1210 27.9
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.4e-107 395.6 1242 27.8
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.4e-107 394.8 1228 26.7
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.2e-107 394.4 1234 27.6
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 4.1e-107 394.0 1228 27.0
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.0e-106 391.7 1228 27.8
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 2.0e-106 391.7 1242 28.1
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 4.6e-106 390.6 1236 26.9
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.7e-105 388.7 1233 27.6
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 8.6e-105 386.3 1229 27.1
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.5e-104 385.6 1233 28.1
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.5e-104 385.6 1237 27.2
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.9e-104 385.2 1229 27.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 3.6e-103 380.9 1252 26.1
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 6.2e-103 380.2 1268 27.4
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 1.1e-102 379.4 1231 27.0
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.8e-102 378.6 1229 26.4
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 3.1e-102 377.9 1234 27.0
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 4.0e-102 377.5 1228 26.6
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 4.0e-102 377.5 1227 26.9
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 6.8e-102 376.7 1229 26.7
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.0e-101 375.2 1218 27.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 2.6e-101 374.8 1227 27.9
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 5.8e-101 373.6 1252 26.7
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 5.8e-101 373.6 1240 26.2
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.1e-99 369.4 1306 24.8
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 1.9e-99 368.6 1233 26.3
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 2.4e-99 368.2 1228 26.1
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 4.6e-98 364.0 1254 26.9
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 6.0e-98 363.6 1233 26.0
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.6e-95 354.4 1223 26.5
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 6.2e-95 353.6 1225 26.3
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.4e-94 352.4 1234 26.0
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.8e-94 352.1 1223 26.0
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.5e-93 349.0 1194 27.3
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.3e-92 345.9 1019 27.4
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.1e-91 342.8 1065 29.2
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.2e-91 341.3 1051 26.8
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.6e-90 339.0 1227 25.9
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 7.3e-88 330.1 1170 26.1
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 2.1e-87 328.6 1101 26.1
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 6.2e-87 327.0 980 26.8
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 8.4e-84 316.6 1233 26.6
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 5.4e-83 313.9 1202 25.4
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.3e-73 282.7 966 26.1
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 4.9e-68 264.2 1042 25.5
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.6e-63 249.2 580 29.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 4.9e-60 237.7 1296 23.6
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 7.9e-58 230.3 1326 24.8
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.0e-57 229.9 257 55.6
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 5.1e-57 227.6 971 24.9
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.0e-52 213.4 390 34.9
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.7e-47 194.9 434 31.1
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 8.2e-47 193.7 876 24.0
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 3.4e-45 188.3 309 37.2
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 6.5e-44 184.1 405 29.9
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 4.2e-43 181.4 142 65.5
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 2.7e-42 178.7 303 35.0
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.0e-41 176.8 309 35.3
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 3.0e-41 175.3 324 34.3
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 3.9e-41 174.9 303 35.0
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 5.1e-41 174.5 1142 22.3
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.7e-39 169.5 562 26.3
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.1e-38 166.8 266 37.6
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.1e-38 165.2 303 34.0
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.1e-35 156.8 307 34.5
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.2e-35 155.2 235 37.4
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 4.2e-35 154.8 307 33.9
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 4.4e-32 144.8 303 32.0
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 3.7e-31 141.7 288 32.6
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.0e-28 133.7 236 34.7
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 8.5e-28 130.6 199 38.7
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 8.8e-25 120.6 175 42.9
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 5.7e-24 117.9 358 25.7
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.6e-21 109.8 382 26.4
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.5e-21 108.6 175 36.0
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.7e-21 107.5 174 37.4
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.7e-20 106.3 175 37.1
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 2.2e-20 105.9 445 24.7
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 1.5e-19 103.2 220 29.5
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.3e-17 95.9 167 35.9
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.0e-17 95.1 504 21.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 3.4e-16 92.0 130 39.2
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-15 90.1 181 33.1
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.8e-09 69.7 285 25.3
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 3.4e-08 65.5 46 63.0
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 5.7e-08 64.7 50 58.0
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 7.5e-08 64.3 46 60.9
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 6.3e-07 61.2 101 33.7


User provided reference genes

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