Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.9e-252 874.8 452 100.0
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 3.7e-74 283.1 432 44.7
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 3.6e-69 266.5 443 42.4
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.7e-66 257.7 455 40.9
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 8.3e-66 255.4 217 64.1
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.5e-46 190.7 413 36.6
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 8.1e-45 185.7 443 36.1
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 9.3e-41 172.2 426 34.0
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 9.3e-41 172.2 408 32.4
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-40 171.8 415 33.5
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.2e-40 171.8 415 33.5
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.1e-40 171.0 433 32.6
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.1e-40 171.0 417 33.3
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 2.1e-40 171.0 430 34.7
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.7e-40 170.6 411 32.6
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 3.5e-40 170.2 415 33.5
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.5e-40 170.2 444 34.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 4.6e-40 169.9 411 32.8
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 4.6e-40 169.9 409 32.3
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 6.0e-40 169.5 415 32.5
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 7.9e-40 169.1 435 34.7
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.0e-39 168.7 409 32.0
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.0e-39 168.7 409 32.0
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.3e-39 168.3 411 32.1
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.3e-39 168.3 441 34.0
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-39 167.9 478 34.5
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.3e-39 167.5 429 31.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.3e-39 167.5 419 33.2
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 3.0e-39 167.2 432 32.2
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 3.9e-39 166.8 418 33.7
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.1e-38 165.2 458 30.8
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.5e-38 164.9 363 35.8
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.9e-38 164.5 449 34.1
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.9e-38 164.5 421 32.5
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 2.5e-38 164.1 424 33.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.3e-37 161.8 415 31.6
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 2.1e-37 161.0 420 32.9
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 4.8e-37 159.8 428 32.5
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 6.2e-37 159.5 405 32.3
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 8.1e-37 159.1 489 31.9
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.1e-36 158.7 490 31.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.8e-36 157.9 433 33.7
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.4e-36 157.5 427 33.7
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.4e-36 157.5 493 30.6
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 2.4e-36 157.5 436 33.9
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 3.1e-36 157.1 421 33.0
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.0e-36 156.8 506 30.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 5.3e-36 156.4 418 33.0
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 5.3e-36 156.4 338 35.2
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 6.9e-36 156.0 419 32.0
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.9e-36 156.0 460 29.8
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 6.9e-36 156.0 540 31.5
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.0e-36 155.6 496 31.2
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.2e-35 155.2 448 32.4
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.5e-35 154.8 495 30.3
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.5e-35 154.8 457 31.7
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 2.0e-35 154.5 491 31.2
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.0e-35 154.5 520 31.3
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 2.0e-35 154.5 459 30.9
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.4e-35 153.7 545 31.4
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 7.6e-35 152.5 426 32.4
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 7.6e-35 152.5 462 29.4
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 7.6e-35 152.5 476 31.7
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.0e-34 152.1 480 33.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.0e-34 152.1 496 31.0
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.7e-34 151.4 426 32.6
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.7e-34 151.4 444 31.3
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 2.2e-34 151.0 451 30.6
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.2e-34 151.0 509 30.1
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.2e-34 151.0 450 29.6
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 3.8e-34 150.2 492 30.7
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.9e-34 149.8 460 29.6
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 4.9e-34 149.8 454 30.2
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 6.4e-34 149.4 485 31.1
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 8.4e-34 149.1 486 30.2
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 8.4e-34 149.1 513 29.8
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.1e-33 148.7 499 29.7
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.1e-33 148.7 464 30.8
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-33 148.7 294 36.4
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.4e-33 148.3 496 32.1
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.9e-33 147.9 402 31.6
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.9e-33 147.9 448 29.9
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.5e-33 147.5 492 29.7
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.5e-33 147.5 484 31.0
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 4.2e-33 146.7 432 30.6
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 4.2e-33 146.7 458 32.8
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 4.2e-33 146.7 348 34.8
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 5.5e-33 146.4 481 31.6
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 7.1e-33 146.0 420 32.4
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 9.3e-33 145.6 293 34.5
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.6e-32 144.8 425 31.5
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.6e-32 144.8 451 32.8
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.6e-32 144.8 473 29.6
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.1e-32 144.4 506 30.8
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 4.6e-32 143.3 282 35.5
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 6.0e-32 142.9 218 40.8
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 6.0e-32 142.9 475 29.7
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 6.0e-32 142.9 442 30.8
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.0e-31 142.1 436 29.6
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.0e-31 142.1 411 31.9
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.8e-31 141.4 490 29.8
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.3e-31 141.0 473 29.6
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.3e-31 141.0 502 30.7
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 2.3e-31 141.0 499 29.7
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 3.0e-31 140.6 445 30.1
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 5.1e-31 139.8 433 30.7
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.7e-31 139.0 496 30.6
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.5e-30 138.3 496 30.6
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.9e-30 137.9 307 32.6
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.5e-30 137.5 493 29.4
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 4.3e-30 136.7 294 35.4
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.3e-30 136.7 402 29.9
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 9.6e-30 135.6 386 30.8
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.3e-29 135.2 421 30.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 3.7e-29 133.7 432 31.0
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 3.7e-29 133.7 481 30.6
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 3.7e-29 133.7 243 37.4
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 8.2e-29 132.5 434 30.2
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.4e-28 131.7 491 30.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.8e-28 131.3 494 29.6
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.8e-28 131.3 219 40.6
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.4e-28 131.0 178 44.4
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 4.0e-28 130.2 491 27.9
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 4.0e-28 130.2 420 28.6
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.5e-27 128.3 486 28.6
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.0e-27 127.9 324 34.6
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 2.6e-27 127.5 314 33.8
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 4.5e-27 126.7 242 34.7
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 5.8e-27 126.3 386 29.0
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.2e-26 124.4 488 29.7
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.9e-25 121.3 445 28.1
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 4.2e-25 120.2 242 35.5
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 4.2e-25 120.2 438 28.3
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 7.1e-25 119.4 500 29.2
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.6e-24 118.2 200 39.0
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.7e-24 117.5 194 39.7
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 6.1e-24 116.3 456 29.6
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 6.1e-24 116.3 149 43.0
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.0e-23 115.5 492 27.4
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.3e-23 114.4 418 30.1
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 5.1e-23 113.2 229 37.6
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 6.7e-23 112.8 272 32.4
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.9e-22 111.3 429 29.4
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.9e-22 111.3 489 27.8
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 2.8e-21 107.5 387 31.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.3e-20 103.2 193 39.4
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.3e-20 103.2 193 39.4
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.2e-19 102.1 156 41.7
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 3.4e-19 100.5 287 30.7
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 4.5e-19 100.1 181 39.2
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.0e-18 99.0 195 37.4
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.2e-18 97.8 418 26.8
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 6.5e-18 96.3 298 28.9
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.4e-17 92.4 397 29.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.0e-15 87.4 247 31.6
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 5.7e-14 83.2 56 67.9
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 7.7e-11 72.8 47 72.3
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.3e-10 72.0 142 36.6
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-09 68.9 114 38.6
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.4e-09 68.6 50 64.0
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 9.4e-09 65.9 402 26.4
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.6e-08 65.1 59 54.2
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.1e-08 64.7 202 31.7
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.7e-08 63.5 118 37.3
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.5e-06 58.5 120 35.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 2.0e-06 58.2 187 28.9


User provided reference genes

Program Settings