Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 2.9e-243 844.7 408 100.0
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.9e-83 311.6 408 43.9
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.5e-82 310.8 407 43.2
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.4e-82 309.7 407 43.0
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 5.7e-82 308.9 405 43.0
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 9.8e-82 308.1 404 42.6
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 9.8e-82 308.1 406 43.6
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 3.7e-81 306.2 404 43.6
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.7e-81 306.2 404 43.6
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 8.3e-81 305.1 404 43.3
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.1e-80 304.7 407 42.5
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 1.4e-80 304.3 405 42.2
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 1.8e-80 303.9 405 43.5
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.8e-80 303.9 405 42.2
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.2e-80 303.1 404 43.6
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.2e-80 303.1 404 43.6
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 3.2e-80 303.1 406 42.4
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 3.2e-80 303.1 407 41.8
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.1e-80 302.8 404 43.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.4e-80 302.4 407 42.5
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 9.2e-80 301.6 406 42.4
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.2e-79 301.2 406 43.6
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 1.6e-79 300.8 408 42.9
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 2.0e-79 300.4 404 42.6
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 2.0e-79 300.4 405 42.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.0e-79 300.4 407 42.8
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.0e-79 300.4 405 43.2
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 2.7e-79 300.1 408 42.9
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 4.5e-79 299.3 406 42.1
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.5e-79 299.3 405 43.2
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 4.5e-79 299.3 404 42.6
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 5.9e-79 298.9 405 42.7
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.0e-78 298.1 410 42.7
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.3e-78 297.7 404 41.8
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.3e-78 297.7 405 43.0
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.3e-78 297.0 405 42.2
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.9e-78 296.6 404 41.1
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 5.0e-78 295.8 411 42.6
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 5.0e-78 295.8 405 42.5
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 6.6e-78 295.4 407 42.3
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 8.6e-78 295.0 407 42.5
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.5e-77 294.3 404 41.3
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.9e-77 293.9 407 40.5
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.5e-77 293.5 408 42.2
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.3e-77 293.1 406 43.6
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 4.3e-77 292.7 404 40.6
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 4.3e-77 292.7 403 40.4
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 5.6e-77 292.4 406 42.4
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 5.6e-77 292.4 404 40.8
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.3e-77 292.0 408 41.4
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 9.5e-77 291.6 405 42.2
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 9.5e-77 291.6 408 41.7
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.2e-76 291.2 406 40.4
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.6e-76 290.8 406 43.6
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.6e-76 290.8 407 42.5
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 2.1e-76 290.4 408 41.4
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.8e-76 290.0 407 42.8
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.8e-76 290.0 407 42.8
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.8e-76 290.0 408 41.4
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.8e-76 290.0 406 41.4
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.6e-76 289.7 404 41.1
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.6e-76 289.7 403 42.4
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 4.7e-76 289.3 407 40.8
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 4.7e-76 289.3 405 41.2
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 4.7e-76 289.3 407 42.5
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 4.7e-76 289.3 401 41.1
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.4e-75 287.7 405 41.0
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.3e-75 287.0 408 41.7
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 4.0e-75 286.2 405 40.5
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 5.2e-75 285.8 406 40.1
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 5.2e-75 285.8 407 40.0
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 8.9e-75 285.0 410 39.0
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.2e-74 284.6 406 40.9
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-74 284.3 406 41.1
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 1.5e-74 284.3 405 41.0
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.6e-74 283.5 407 39.6
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 3.4e-74 283.1 404 40.6
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 5.8e-74 282.3 406 40.4
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 7.5e-74 282.0 406 40.9
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 9.8e-74 281.6 403 40.7
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.3e-73 281.2 399 40.4
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.7e-73 280.8 408 41.4
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 4.9e-73 279.3 406 39.7
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 6.4e-73 278.9 406 39.9
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 8.3e-73 278.5 406 40.1
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 8.3e-73 278.5 408 39.7
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 8.3e-73 278.5 406 39.9
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.4e-72 277.7 400 40.5
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.9e-72 277.3 400 40.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 2.4e-72 276.9 407 38.6
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 4.1e-72 276.2 409 40.1
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 4.1e-72 276.2 406 40.1
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 4.1e-72 276.2 404 39.6
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 4.6e-71 272.7 406 38.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 6.0e-71 272.3 407 40.0
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.7e-70 270.8 399 38.6
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.0e-70 270.0 406 39.4
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 5.0e-70 269.2 455 37.8
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.5e-69 266.9 407 39.8
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.6e-68 264.2 401 38.7
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 2.1e-68 263.8 400 38.2
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 3.6e-68 263.1 404 39.1
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 8.0e-68 261.9 406 38.2
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.1e-67 261.5 396 38.9
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 6.8e-67 258.8 400 37.8
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 6.8e-67 258.8 400 38.2
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 2.0e-66 257.3 385 41.3
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 9.8e-66 255.0 400 37.2
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 6.4e-65 252.3 392 37.2
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 6.4e-65 252.3 300 45.3
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 5.4e-64 249.2 451 35.3
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 7.8e-63 245.4 403 36.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 3.3e-61 240.0 406 37.7
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.6e-60 237.7 410 35.4
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 3.6e-60 236.5 403 35.2
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 3.6e-60 236.5 413 35.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 4.0e-59 233.0 376 37.8
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 5.2e-59 232.6 364 37.9
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.9e-59 231.9 408 35.8
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.3e-57 228.0 403 36.5
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.9e-56 224.2 344 40.4
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 3.2e-56 223.4 414 35.3
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 3.2e-56 223.4 365 37.0
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 5.1e-54 216.1 329 38.6
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 4.3e-53 213.0 310 40.3
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.4e-49 199.1 309 37.9
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 5.4e-48 196.1 381 37.0
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.3e-46 191.4 161 57.1
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 4.3e-45 186.4 422 32.9
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.3e-38 164.9 240 40.8
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.7e-38 164.5 145 51.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 1.8e-35 154.5 268 36.6
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 5.8e-34 149.4 270 36.7
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 7.6e-34 149.1 266 34.6
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-33 148.3 150 49.3
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.9e-33 147.1 134 50.0
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 8.4e-33 145.6 138 50.7
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 8.4e-33 145.6 138 50.7
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.8e-30 137.9 286 34.6
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 7.4e-29 132.5 428 31.3
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 9.6e-29 132.1 279 32.6
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 6.7e-22 109.4 91 54.9
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 3.7e-20 103.6 326 27.6
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 1.1e-16 92.0 78 50.0
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 6.1e-15 86.3 90 47.8
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.5e-13 81.6 75 49.3
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 3.4e-10 70.5 295 24.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 5.0e-09 66.6 104 41.3


User provided reference genes

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