Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb125680 Zea mays HOM05D000104 ORTHO05D442541 6.0e-85 317.4 151 100.0
Zm00001eb220010 Zea mays HOM05D000104 ORTHO05D008076 1.6e-21 106.7 51 94.1
Os05g0247900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D008076 4.5e-16 88.6 48 79.2
ClCG02G017740 Citrullus lanatus HOM05D000104 ORTHO05D008076 3.8e-15 85.5 49 69.4
Hund01028 Selenicereus undatus HOM05D000104 ORTHO05D008076 3.8e-15 85.5 49 69.4
SEGI_23197 Sequoiadendron giganteum HOM05D000104 ORTHO05D008076 3.8e-15 85.5 47 72.3
CSS0045250 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008076 6.5e-15 84.7 49 65.3
Rhsim06G0139600 Rhododendron simsii HOM05D000104 ORTHO05D008076 6.5e-15 84.7 49 71.4
RhsimUnG0145100 Rhododendron simsii HOM05D000104 ORTHO05D008076 6.5e-15 84.7 49 71.4
Nn1g00011 Nelumbo nucifera HOM05D000104 ORTHO05D008076 1.1e-14 84.0 49 67.3
Nn1g06495 Nelumbo nucifera HOM05D000104 ORTHO05D008076 1.1e-14 84.0 49 67.3
Peaxi162Scf01415g00029 Petunia axillaris HOM05D000104 ORTHO05D008076 1.1e-14 84.0 49 65.3
Sed0011541 Sechium edule HOM05D000104 ORTHO05D008076 1.5e-14 83.6 49 69.4
Sopen07g027840 Solanum pennellii HOM05D000104 ORTHO05D008076 1.5e-14 83.6 49 65.3
PGSC0003DMG400032815 Solanum tuberosum HOM05D000104 ORTHO05D008076 1.5e-14 83.6 49 65.3
TAR626G0345 Trochodendron aralioides HOM05D000104 ORTHO05D008076 1.5e-14 83.6 49 69.4
Sc05g0003350 Simmondsia chinensis HOM05D000104 ORTHO05D008076 2.5e-14 82.8 49 65.3
CAN.G209.36 Capsicum annuum HOM05D000104 ORTHO05D008076 3.2e-14 82.4 49 63.3
vmacro12325 Vaccinium macrocarpon HOM05D000104 ORTHO05D008076 3.2e-14 82.4 49 69.4
GSVIVG01020568001 Vitis vinifera HOM05D000104 ORTHO05D008076 3.2e-14 82.4 49 67.3
Zm00001eb195700 Zea mays HOM05D000857 ORTHO05D001382 4.2e-14 82.0 57 80.7
Aqoxy1G02377 Aquilegia oxysepala HOM05D000104 ORTHO05D008076 5.5e-14 81.6 49 65.3
Cc05_g07380 Coffea canephora HOM05D000104 ORTHO05D008076 5.5e-14 81.6 49 67.3
Dinv13396 Davidia involucrata HOM05D000104 ORTHO05D008076 5.5e-14 81.6 49 67.3
Lsat_1_v5_gn_4_66800 Lactuca sativa HOM05D000104 ORTHO05D008076 5.5e-14 81.6 49 63.3
MBI02_g25830_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008076 5.5e-14 81.6 43 79.1
MSTRG.14347 Avicennia marina HOM05D000104 ORTHO05D008076 7.2e-14 81.3 49 63.3
CANSAT64G2467 Cannabis sativa HOM05D000104 ORTHO05D008076 7.2e-14 81.3 49 67.3
QL08p039603 Quercus lobata HOM05D000104 ORTHO05D008076 7.2e-14 81.3 49 63.3
ECA232G2294 Erigeron canadensis HOM05D000047 ORTHO05D000044 9.4e-14 80.9 49 61.2
Nitab4.5_0001752g0060 Nicotiana tabacum HOM05D000104 ORTHO05D008076 9.4e-14 80.9 49 63.3
THA.LOC104801170 Tarenaya hassleriana HOM05D000104 ORTHO05D008076 9.4e-14 80.9 49 65.3
CDE06G2137 Ceratophyllum demersum HOM05D000104 ORTHO05D008076 1.2e-13 80.5 49 61.2
Ca_18940_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 62.5
FvH4_6g26480 Fragaria vesca HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 64.6
FAN02G3238 Fragaria x ananassa HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 64.6
FAN05G3484 Fragaria x ananassa HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 64.6
FAN14G4359 Fragaria x ananassa HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 64.6
Medtr4g078460 Medicago truncatula HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 62.5
Medtr4g078495 Medicago truncatula HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 62.5
Nitab4.5_0000638g0140 Nicotiana tabacum HOM05D000104 ORTHO05D008076 1.6e-13 80.1 48 62.5
Solyc07g053870.4 Solanum lycopersicum HOM05D000104 ORTHO05D008076 1.6e-13 80.1 49 63.3
Actinidia11018 Actinidia chinensis HOM05D000104 ORTHO05D008076 2.1e-13 79.7 48 68.8
Oeu005602.1 Olea europaea HOM05D000104 ORTHO05D008076 2.1e-13 79.7 49 61.2
RcHm_v2.0_Chr2g0127761 Rosa chinensis HOM05D000104 ORTHO05D008076 2.1e-13 79.7 48 64.6
arahy.Tifrunner.gnm1.ann1.84I3GY Arachis hypogaea HOM05D000104 ORTHO05D008076 2.7e-13 79.3 48 64.6
arahy.Tifrunner.gnm1.ann1.Y7U98Q Arachis hypogaea HOM05D000104 ORTHO05D008076 2.7e-13 79.3 48 64.6
Prupe.3G139100 Prunus persica HOM05D000104 ORTHO05D008076 2.7e-13 79.3 49 65.3
TPR.G29256 Trifolium pratense HOM05D000104 ORTHO05D008076 2.7e-13 79.3 48 62.5
DCAR_019177 Daucus carota HOM05D000104 ORTHO05D008076 3.6e-13 79.0 48 62.5
HanXRQChr10g0284061 Helianthus annuus HOM05D000104 ORTHO05D008076 3.6e-13 79.0 49 59.2
Psat7g169040 Pisum sativum HOM05D000104 ORTHO05D008076 3.6e-13 79.0 48 62.5
Potri.017G012400 Populus trichocarpa HOM05D000104 ORTHO05D008076 3.6e-13 79.0 49 63.3
MELO3C013630.2 Cucumis melo HOM05D000104 ORTHO05D008076 4.7e-13 78.6 48 68.8
FAN09G3634 Fragaria x ananassa HOM05D000104 ORTHO05D008076 4.7e-13 78.6 48 62.5
Lalb_Chr01g0005161 Lupinus albus HOM05D000104 ORTHO05D008076 4.7e-13 78.6 48 58.3
VMungo1127G2308 Vigna mungo HOM05D000104 ORTHO05D008076 4.7e-13 78.6 48 60.4
Atru.chr6.2900 Acer truncatum HOM05D000104 ORTHO05D008076 6.1e-13 78.2 49 63.3
Thecc.02G182200 Theobroma cacao HOM05D000104 ORTHO05D008076 6.1e-13 78.2 49 63.3
CsaV3_6G012820 Cucumis sativus L. HOM05D000104 ORTHO05D008076 8.0e-13 77.8 48 66.7
Lj3g0003116 Lotus japonicus HOM05D000104 ORTHO05D008076 8.0e-13 77.8 48 60.4
MD17G1236900 Malus domestica HOM05D000104 ORTHO05D008076 8.0e-13 77.8 48 64.6
PGR042G0545 Punica granatum HOM05D000104 ORTHO05D008076 8.0e-13 77.8 49 59.2
Sabra17G0010200 Salix brachista HOM05D000104 ORTHO05D008076 1.0e-12 77.4 49 63.3
Phvul.011G120000 Phaseolus vulgaris HOM05D000104 ORTHO05D008076 1.4e-12 77.0 48 56.2
SGA_v2.0_scaffold109G31119 Striga asiatica HOM05D000104 ORTHO05D008076 1.4e-12 77.0 49 61.2
Migut.J00820 Erythranthe guttata HOM05D000104 ORTHO05D008076 1.8e-12 76.6 49 59.2
Cpa.g.sc83.59 Carica papaya HOM05D000104 ORTHO05D008076 2.3e-12 76.3 48 66.7
Manes.13G144908 Manihot esculenta HOM05D000104 ORTHO05D008076 2.3e-12 76.3 49 61.2
SalBow1G4063 Salvia bowleyana HOM05D000104 ORTHO05D008076 2.3e-12 76.3 49 63.3
ATR0763G024 Amborella trichopoda HOM05D000104 ORTHO05D008076 3.0e-12 75.9 46 65.2
CiPaw.03G178600 Carya illinoinensis HOM05D000104 ORTHO05D008076 3.0e-12 75.9 48 60.4
HPP92_010208 Vanilla planifolia HOM05D000104 ORTHO05D008076 4.0e-12 75.5 49 57.1
Haze_13199 Corylus avellana HOM05D000104 ORTHO05D008076 6.7e-12 74.7 48 62.5
Ciclev10003508m.g Citrus clementina HOM05D000104 ORTHO05D008076 8.8e-12 74.3 49 59.2
Sp1g02610 Schrenkiella parvula HOM05D000104 ORTHO05D008076 8.8e-12 74.3 50 62.0
COL.COLO4_05945 Corchorus olitorius HOM05D000104 ORTHO05D008076 1.5e-11 73.6 49 57.1
Glyma.12G115800 Glycine max HOM05D000104 ORTHO05D008076 1.5e-11 73.6 48 56.2
Gohir.A12G138700 Gossypium hirsutum HOM05D000104 ORTHO05D008076 1.5e-11 73.6 49 59.2
TWI59G0128 Tripterygium wilfordii HOM05D000104 ORTHO05D008076 2.0e-11 73.2 49 61.2
Ah.01g004160 Amaranthus hybridus HOM05D000104 ORTHO05D008076 2.6e-11 72.8 49 63.3
AL1G13300 Arabidopsis lyrata HOM05D000104 ORTHO05D008076 2.6e-11 72.8 50 58.0
AT1G03750 Arabidopsis thaliana HOM05D000104 ORTHO05D008076 2.6e-11 72.8 50 58.0
EL10Ac9g20791 Beta vulgaris HOM05D000104 ORTHO05D008076 2.6e-11 72.8 49 61.2
Carub.0001s0285 Capsella rubella HOM05D000104 ORTHO05D008076 3.3e-11 72.4 50 58.0
Eucgr.A01830 Eucalyptus grandis HOM05D000104 ORTHO05D008076 4.4e-11 72.0 48 56.2
BcaC07g42229 Brassica carinata HOM05D000104 ORTHO05D008076 5.7e-11 71.6 50 60.0
A09p68230 Brassica napus HOM05D000084 ORTHO05D008076 5.7e-11 71.6 50 60.0
C08p52670 Brassica napus HOM05D000084 ORTHO05D008076 5.7e-11 71.6 52 57.7
BolC8t52793H Brassica oleracea HOM05D000084 ORTHO05D008076 5.7e-11 71.6 50 60.0
BraA09t42158Z Brassica rapa HOM05D000084 ORTHO05D008076 5.7e-11 71.6 50 60.0
Thhalv10006771m.g Eutrema salsugineum HOM05D000104 ORTHO05D008076 5.7e-11 71.6 50 60.0
Lj8A109T81 Lonicera japonica HOM05D000104 ORTHO05D008076 5.7e-11 71.6 48 56.2
CARHR003080 Cardamine hirsuta HOM05D000104 ORTHO05D008076 7.5e-11 71.2 50 58.0
AUR62037597 Chenopodium quinoa HOM05D000104 ORTHO05D008076 1.3e-10 70.5 48 60.4
Duzib052G0408 Durio zibethinus HOM05D000104 ORTHO05D008076 1.3e-10 70.5 49 57.1
Gohir.D12G143000 Gossypium hirsutum HOM05D000104 ORTHO05D008076 1.3e-10 70.5 49 57.1
Gorai.008G154400 Gossypium raimondii HOM05D000104 ORTHO05D008076 1.3e-10 70.5 49 57.1
Aa31LG1G8960 Aethionema arabicum HOM05D000104 ORTHO05D008076 2.2e-10 69.7 48 58.3
unitig_62.g23165 Utricularia gibba HOM05D000104 ORTHO05D008076 2.2e-10 69.7 49 57.1
Pp3c12_25750 Physcomitrium patens HOM05D000104 ORTHO05D008076 5.3e-09 65.1 46 54.3
SHI10389 Sapria himalayana HOM05D000104 ORTHO05D008076 5.3e-09 65.1 47 55.3
AagrBONN_evm.TU.Sc2ySwM_344.5090 Anthoceros agrestis HOM05D000104 ORTHO05D008076 1.2e-08 63.9 47 55.3
CBR_g8167 Chara braunii HOM05D000104 ORTHO05D008076 2.7e-08 62.8 47 46.8
SMO147G0241 Selaginella moellendorffii HOM05D000104 ORTHO05D008076 1.0e-07 60.8 47 48.9
Mapoly0042s0047 Marchantia polymorpha HOM05D000104 ORTHO05D008076 3.8e-07 58.9 46 47.8


User provided reference genes

Program Settings