Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb125300 Zea mays HOM05D007719 ORTHO05D009782 1.6e-219 765.8 382 100.0
Os01g0127400 Oryza sativa ssp. japonica HOM05D007719 ORTHO05D009782 6.0e-166 587.8 426 71.6
FAN12G3181 Fragaria x ananassa HOM05D007719 ORTHO05D009782 2.1e-126 456.4 408 58.8
Rhsim09G0099000 Rhododendron simsii HOM05D007719 ORTHO05D009782 4.6e-126 455.3 399 59.4
FvH4_4g32280 Fragaria vesca HOM05D007719 ORTHO05D009782 6.1e-126 454.9 392 60.2
Psat0s3407g0080 Pisum sativum HOM05D007719 ORTHO05D009782 6.1e-126 454.9 379 62.3
MD16G1029600 Malus domestica HOM05D007719 ORTHO05D009782 2.3e-125 453.0 412 58.0
Dinv05161 Davidia involucrata HOM05D007719 ORTHO05D009782 3.9e-125 452.2 376 61.4
Medtr1g030640 Medicago truncatula HOM05D007719 ORTHO05D009782 5.1e-125 451.8 396 60.4
CiPaw.05G248600 Carya illinoinensis HOM05D007719 ORTHO05D009782 6.7e-125 451.4 387 60.2
FAN22G2057 Fragaria x ananassa HOM05D007719 ORTHO05D009782 6.7e-125 451.4 392 59.7
TAR629G1042 Trochodendron aralioides HOM05D007719 ORTHO05D009782 2.0e-124 449.9 402 59.2
FAN07G1524 Fragaria x ananassa HOM05D007719 ORTHO05D009782 3.3e-124 449.1 368 60.9
RcHm_v2.0_Chr4g0441071 Rosa chinensis HOM05D007719 ORTHO05D009782 3.3e-124 449.1 413 56.9
vmacro10633 Vaccinium macrocarpon HOM05D007719 ORTHO05D009782 3.3e-124 449.1 406 57.4
TPR.G36961 Trifolium pratense HOM05D007719 ORTHO05D009782 4.3e-124 448.7 394 59.9
QL01p001957 Quercus lobata HOM05D007719 ORTHO05D009782 9.7e-124 447.6 395 58.2
ATR0686G226 Amborella trichopoda HOM05D007719 ORTHO05D009782 4.8e-123 445.3 399 58.6
Glyma.09G119300 Glycine max HOM05D007719 ORTHO05D009782 8.2e-123 444.5 381 60.6
CSS0046068 Camellia sinensis var. sinensis HOM05D007719 ORTHO05D009782 1.1e-122 444.1 354 62.4
Lj2g0007830 Lotus japonicus HOM05D007719 ORTHO05D009782 1.4e-122 443.7 349 64.2
VMungo1215G2618 Vigna mungo HOM05D007719 ORTHO05D009782 1.8e-122 443.4 346 64.7
Lalb_Chr17g0338681 Lupinus albus HOM05D007719 ORTHO05D009782 2.4e-122 443.0 392 58.9
Potri.010G114100 Populus trichocarpa HOM05D007719 ORTHO05D009782 4.1e-122 442.2 411 57.4
Atru.chr11.428 Acer truncatum HOM05D007719 ORTHO05D009782 5.3e-122 441.8 407 56.8
HanXRQChr17g0566951 Helianthus annuus HOM05D007719 ORTHO05D009782 1.5e-121 440.3 355 62.8
Lsat_1_v5_gn_4_14941 Lactuca sativa HOM05D007719 ORTHO05D009782 1.5e-121 440.3 355 62.8
arahy.Tifrunner.gnm1.ann1.Y8VIVB Arachis hypogaea HOM05D007719 ORTHO05D009782 2.6e-121 439.5 353 62.0
Ca_25710_v3 Cicer arietinum L. HOM05D007719 ORTHO05D009782 2.6e-121 439.5 384 59.9
ECA234G0976 Erigeron canadensis HOM05D007719 ORTHO05D009782 3.4e-121 439.1 372 61.0
Phvul.003G022800 Phaseolus vulgaris HOM05D007719 ORTHO05D009782 3.4e-121 439.1 388 59.8
Actinidia36679 Actinidia chinensis HOM05D007719 ORTHO05D009782 1.3e-120 437.2 399 58.4
Sc11g0004120 Simmondsia chinensis HOM05D007719 ORTHO05D009782 1.3e-120 437.2 349 63.3
HPP92_021852 Vanilla planifolia HOM05D007719 ORTHO05D009782 1.3e-120 437.2 374 60.2
PGR119G0428 Punica granatum HOM05D007719 ORTHO05D009782 2.2e-120 436.4 392 58.4
FAN17G2178 Fragaria x ananassa HOM05D007719 ORTHO05D009782 3.8e-120 435.6 361 60.4
TWI75G0056 Tripterygium wilfordii HOM05D007719 ORTHO05D009782 3.8e-120 435.6 413 57.1
Gorai.008G166400 Gossypium raimondii HOM05D007719 ORTHO05D009782 8.5e-120 434.5 353 61.8
Hund24987 Selenicereus undatus HOM05D007719 ORTHO05D009782 8.5e-120 434.5 400 58.5
Gohir.A12G150300 Gossypium hirsutum HOM05D007719 ORTHO05D009782 1.1e-119 434.1 353 62.0
Eucgr.G02196 Eucalyptus grandis HOM05D007719 ORTHO05D009782 5.5e-119 431.8 403 57.8
EL10Ac3g06304 Beta vulgaris HOM05D007719 ORTHO05D009782 3.6e-118 429.1 366 59.8
AUR62030024 Chenopodium quinoa HOM05D007719 ORTHO05D009782 3.6e-118 429.1 359 60.2
Sopen05g004110 Solanum pennellii HOM05D007719 ORTHO05D009782 1.0e-117 427.6 352 60.8
AUR62002606 Chenopodium quinoa HOM05D007719 ORTHO05D009782 2.3e-117 426.4 359 59.6
Sed0008286 Sechium edule HOM05D007719 ORTHO05D009782 3.9e-117 425.6 375 58.1
CAN.G1334.8 Capsicum annuum HOM05D007719 ORTHO05D009782 5.1e-117 425.2 368 58.7
Cc11_g08840 Coffea canephora HOM05D007719 ORTHO05D009782 6.7e-117 424.9 354 61.0
COL.COLO4_20469 Corchorus olitorius HOM05D007719 ORTHO05D009782 1.1e-116 424.1 398 56.3
Nitab4.5_0004776g0060 Nicotiana tabacum HOM05D007719 ORTHO05D009782 1.1e-116 424.1 349 60.7
Sabra10G0084100 Salix brachista HOM05D007719 ORTHO05D009782 1.1e-116 424.1 394 55.3
Solyc05g008270.3 Solanum lycopersicum HOM05D007719 ORTHO05D009782 1.1e-116 424.1 352 60.2
ClCG01G006100 Citrullus lanatus HOM05D007719 ORTHO05D009782 3.3e-116 422.5 356 59.6
Manes.15G114900 Manihot esculenta HOM05D007719 ORTHO05D009782 4.4e-116 422.2 353 60.6
SEGI_18275 Sequoiadendron giganteum HOM05D007719 ORTHO05D009782 7.4e-116 421.4 357 59.1
MSTRG.23215 Avicennia marina HOM05D007719 ORTHO05D009782 2.2e-115 419.9 395 56.5
Oeu034423.3 Olea europaea HOM05D007719 ORTHO05D009782 2.2e-115 419.9 432 53.2
SalBow5G1767 Salvia bowleyana HOM05D007719 ORTHO05D009782 4.8e-115 418.7 381 57.7
unitig_61.g26194 Utricularia gibba HOM05D007719 ORTHO05D009782 8.2e-115 417.9 362 58.8
PGSC0003DMG400030550 Solanum tuberosum HOM05D007719 ORTHO05D009782 2.4e-114 416.4 362 58.3
CsaV3_5G028560 Cucumis sativus L. HOM05D007719 ORTHO05D009782 2.0e-113 413.3 395 54.7
SGA_v2.0_scaffold25G10737 Striga asiatica HOM05D007719 ORTHO05D009782 1.3e-112 410.6 414 54.6
DCAR_030215 Daucus carota HOM05D007719 ORTHO05D009782 1.7e-112 410.2 345 60.0
Ah.07g204110 Amaranthus hybridus HOM05D007719 ORTHO05D009782 2.2e-112 409.8 401 54.1
Mapoly0070s0076 Marchantia polymorpha HOM05D007719 ORTHO05D009782 6.5e-112 408.3 419 53.0
Pp3c1_3200 Physcomitrium patens HOM05D007719 ORTHO05D009782 7.2e-111 404.8 367 55.3
Migut.O00274 Erythranthe guttata HOM05D007719 ORTHO05D009782 2.1e-110 403.3 389 55.3
Prupe.1G323300 Prunus persica HOM05D007719 ORTHO05D009782 2.3e-109 399.8 366 57.4
arahy.Tifrunner.gnm1.ann1.L198GP Arachis hypogaea HOM05D007719 ORTHO05D009782 5.2e-109 398.7 366 56.0
SMO236G0033 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 1.6e-105 387.1 368 54.3
SMO236G0110 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 1.6e-105 387.1 368 54.3
Peaxi162Scf00205g00122 Petunia axillaris HOM05D007719 ORTHO05D009782 2.2e-104 383.3 350 56.6
CDE04G3405 Ceratophyllum demersum HOM05D007719 ORTHO05D009782 1.3e-99 367.5 368 56.2
Actinidia15254 Actinidia chinensis HOM05D007719 ORTHO05D009782 1.0e-96 357.8 405 52.3
MELO3C005317.2 Cucumis melo HOM05D007719 ORTHO05D009782 2.5e-95 353.2 430 46.7
GSVIVG01011772001 Vitis vinifera HOM05D007719 ORTHO05D009782 2.0e-92 343.6 301 59.8
SMO187G0003 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 5.7e-84 315.5 321 52.3
Cfa008596 Carpinus fangiana HOM05D007719 ORTHO05D009782 6.2e-78 295.4 219 66.2
Cpa.g.sc65.124 Carica papaya HOM05D007719 ORTHO05D009782 1.0e-77 294.7 234 65.4
Gohir.D12G153900 Gossypium hirsutum HOM05D007719 ORTHO05D009782 2.0e-76 290.4 200 71.0
Thecc.02G280000 Theobroma cacao HOM05D007719 ORTHO05D009782 4.4e-76 289.3 200 70.5
Nn4g24120 Nelumbo nucifera HOM05D007719 ORTHO05D009782 1.9e-74 283.9 174 75.3
Haze_11019 Corylus avellana HOM05D007719 ORTHO05D009782 1.7e-72 277.3 232 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3777 Anthoceros agrestis HOM05D007719 ORTHO05D009782 5.4e-66 255.8 275 51.3
CBR_g12440 Chara braunii HOM05D007719 ORTHO05D009782 3.6e-62 243.0 306 44.8
Duzib268G0649 Durio zibethinus HOM05D007719 ORTHO05D009782 8.1e-62 241.9 191 63.4
GSVIVG01011775001 Vitis vinifera HOM05D007719 ORTHO05D009782 8.9e-53 211.8 145 71.7
SEGI_23314 Sequoiadendron giganteum HOM05D007719 ORTHO05D009782 8.4e-51 205.3 233 47.6
Cfa008597 Carpinus fangiana HOM05D007719 ORTHO05D009782 3.2e-42 176.8 136 64.0
Haze_11018 Corylus avellana HOM05D007719 ORTHO05D009782 1.0e-40 171.8 121 66.1
TPR.G29132 Trifolium pratense HOM05D007719 ORTHO05D009782 3.8e-11 73.6 77 51.9


User provided reference genes

Program Settings