Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb125230 Zea mays HOM05D041575 ORTHO05D001148 0.0e+00 1728.8 912 100.0
Zm00001eb335340 Zea mays HOM05D041575 ORTHO05D001148 0.0e+00 1157.1 783 81.1
Os01g0133100 Oryza sativa ssp. japonica HOM05D041575 ORTHO05D001148 6.5e-142 509.2 671 54.7
MBI09_g36995_MAGBIO Magnolia biondii HOM05D004610 ORTHO05D001148 6.3e-28 130.6 490 29.4
TAR622G1165 Trochodendron aralioides HOM05D004610 ORTHO05D001148 1.2e-26 126.3 363 30.9
Sc11g0008360 Simmondsia chinensis HOM05D004610 ORTHO05D001148 1.3e-25 122.9 979 24.1
GSVIVG01031010001 Vitis vinifera HOM05D004610 ORTHO05D001148 8.5e-25 120.2 1021 23.6
Nn4g23904 Nelumbo nucifera HOM05D004610 ORTHO05D001148 1.1e-24 119.8 1013 23.9
COL.COLO4_09347 Corchorus olitorius HOM05D004610 ORTHO05D001148 3.2e-24 118.2 1015 24.5
QL12p016556 Quercus lobata HOM05D004610 ORTHO05D001148 4.2e-24 117.9 997 24.4
QL02p051038 Quercus lobata HOM05D004610 ORTHO05D001148 7.2e-24 117.1 988 24.5
Cpa.g.sc170.58 Carica papaya HOM05D004610 ORTHO05D001148 9.3e-24 116.7 1008 23.7
Ah.16g101700 Amaranthus hybridus HOM05D004610 ORTHO05D001148 4.6e-23 114.4 977 23.5
Potri.004G098300 Populus trichocarpa HOM05D004610 ORTHO05D001148 1.8e-22 112.5 372 26.1
TWI77G0057 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 1.8e-22 112.5 996 23.8
Ciclev10010987m.g Citrus clementina HOM05D004610 ORTHO05D001148 2.3e-22 112.1 1004 23.4
Manes.01G111200 Manihot esculenta HOM05D004610 ORTHO05D001148 2.3e-22 112.1 1010 23.5
Peaxi162Scf00394g00714 Petunia axillaris HOM05D004610 ORTHO05D001148 8.7e-22 110.2 997 23.7
Hma1.2p1_1109F.1_g258110 Hydrangea macrophylla HOM05D004610 ORTHO05D001148 1.1e-21 109.8 973 25.0
TWI53G0037 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 1.5e-21 109.4 449 26.9
Lalb_Chr04g0257511 Lupinus albus HOM05D004610 ORTHO05D001148 2.5e-21 108.6 386 27.5
AUR62009008 Chenopodium quinoa HOM05D004610 ORTHO05D001148 5.7e-21 107.5 972 22.3
Nitab4.5_0000912g0100 Nicotiana tabacum HOM05D004610 ORTHO05D001148 7.4e-21 107.1 974 23.3
Potri.017G116000 Populus trichocarpa HOM05D004610 ORTHO05D001148 7.4e-21 107.1 1024 23.1
Thecc.04G132400 Theobroma cacao HOM05D004610 ORTHO05D001148 7.4e-21 107.1 1024 24.2
EL10Ac2g04555 Beta vulgaris HOM05D004610 ORTHO05D001148 9.7e-21 106.7 974 22.6
ATR1125G050 Amborella trichopoda HOM05D004610 ORTHO05D001148 2.8e-20 105.1 471 25.7
DCAR_021448 Daucus carota HOM05D004610 ORTHO05D001148 3.7e-20 104.8 969 24.0
Solyc02g086130.4 Solanum lycopersicum HOM05D004610 ORTHO05D001148 6.3e-20 104.0 488 25.6
Sopen02g030820 Solanum pennellii HOM05D004610 ORTHO05D001148 8.2e-20 103.6 981 24.1
AUR62023294 Chenopodium quinoa HOM05D004610 ORTHO05D001148 1.4e-19 102.8 978 22.3
Cc07_g08740 Coffea canephora HOM05D004610 ORTHO05D001148 3.1e-19 101.7 992 23.3
Duzib138G0683 Durio zibethinus HOM05D004610 ORTHO05D001148 3.1e-19 101.7 1009 23.5
PGR042G0456 Punica granatum HOM05D004610 ORTHO05D001148 3.1e-19 101.7 953 23.2
Dinv34812 Davidia involucrata HOM05D004610 ORTHO05D001133 4.1e-19 101.3 1008 24.3
TAR629G1786 Trochodendron aralioides HOM05D004610 ORTHO05D001148 5.3e-19 100.9 1032 23.0
Aqoxy3G00248 Aquilegia oxysepala HOM05D004610 ORTHO05D001148 1.5e-18 99.4 1037 23.8
Cfa007916 Carpinus fangiana HOM05D004610 ORTHO05D001148 2.0e-18 99.0 372 28.2
Nitab4.5_0004416g0030 Nicotiana tabacum HOM05D004610 ORTHO05D001148 2.0e-18 99.0 975 22.7
Gohir.A11G163800 Gossypium hirsutum HOM05D004610 ORTHO05D001148 2.6e-18 98.6 1013 23.6
Hund13710 Selenicereus undatus HOM05D004610 ORTHO05D001148 2.6e-18 98.6 991 22.7
Actinidia36329 Actinidia chinensis HOM05D004610 ORTHO05D001148 4.5e-18 97.8 1005 22.4
Lalb_Chr17g0335941 Lupinus albus HOM05D004610 ORTHO05D001148 4.5e-18 97.8 384 27.9
PGSC0003DMG400026403 Solanum tuberosum HOM05D004610 ORTHO05D001148 5.9e-18 97.4 986 23.6
Gohir.D11G170100 Gossypium hirsutum HOM05D004610 ORTHO05D001148 1.7e-17 95.9 1012 23.9
Glyma.18G295800 Glycine max HOM05D004610 ORTHO05D001148 2.2e-17 95.5 371 25.9
Gorai.007G181900 Gossypium raimondii HOM05D004610 ORTHO05D001148 2.2e-17 95.5 1011 23.9
Haze_14166 Corylus avellana HOM05D004610 ORTHO05D001148 2.9e-17 95.1 1003 23.8
MD17G1245400 Malus domestica HOM05D004610 ORTHO05D001148 3.8e-17 94.7 1009 22.8
Glyma.08G366600 Glycine max HOM05D004610 ORTHO05D001148 8.5e-17 93.6 371 25.6
Atru.chr1.1663 Acer truncatum HOM05D004610 ORTHO05D001148 1.1e-16 93.2 1005 23.9
Duzib133G1423 Durio zibethinus HOM05D004610 ORTHO05D001148 1.4e-16 92.8 1035 22.8
Lj4C191T3 Lonicera japonica HOM05D004610 ORTHO05D001148 1.4e-16 92.8 989 23.2
Prupe.3G143500 Prunus persica HOM05D004610 ORTHO05D001148 1.4e-16 92.8 1007 23.4
Rhsim10G0068500 Rhododendron simsii HOM05D004610 ORTHO05D001148 1.9e-16 92.4 1014 21.5
TWI74G1419 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 2.5e-16 92.0 1023 23.1
CDE06G1633 Ceratophyllum demersum HOM05D004610 ORTHO05D001148 3.2e-16 91.7 954 24.6
arahy.Tifrunner.gnm1.ann1.165KFU Arachis hypogaea HOM05D004610 ORTHO05D001148 4.2e-16 91.3 370 26.2
arahy.Tifrunner.gnm1.ann1.EX8XGT Arachis hypogaea HOM05D004610 ORTHO05D001148 4.2e-16 91.3 370 26.2
HanXRQChr12g0375771 Helianthus annuus HOM05D004610 ORTHO05D001148 1.2e-15 89.7 263 27.0
DCAR_017186 Daucus carota HOM05D004610 ORTHO05D001148 2.1e-15 89.0 365 25.8
CiPaw.03G062700 Carya illinoinensis HOM05D004610 ORTHO05D001148 2.7e-15 88.6 1001 24.0
Dinv33955 Davidia involucrata HOM05D004610 ORTHO05D001148 6.1e-15 87.4 457 24.1
Lj1g0023090 Lotus japonicus HOM05D004610 ORTHO05D001148 1.0e-14 86.7 255 25.5
MD09G1253600 Malus domestica HOM05D004610 ORTHO05D001148 1.8e-14 85.9 258 29.1
Ca_08077_v3 Cicer arietinum L. HOM05D004610 ORTHO05D001148 2.3e-14 85.5 320 25.6
SEGI_10040 Sequoiadendron giganteum HOM05D002110 ORTHO05D001148 2.6e-13 82.0 447 25.3
Eucgr.J01505 Eucalyptus grandis HOM05D004610 ORTHO05D001148 4.4e-13 81.3 375 26.1
vmacro05540 Vaccinium macrocarpon HOM05D004610 ORTHO05D001148 9.7e-13 80.1 1031 21.0
HanXRQChr15g0470371 Helianthus annuus HOM05D004610 ORTHO05D001148 1.7e-12 79.3 266 25.9
CAN.G625.29 Capsicum annuum HOM05D004610 ORTHO05D001148 2.2e-12 79.0 281 26.3
CsaV3_6G022550 Cucumis sativus L. HOM05D002110 ORTHO05D001148 8.2e-12 77.0 285 25.3
Oeu050377.1 Olea europaea HOM05D004610 ORTHO05D001148 8.2e-12 77.0 979 23.5
Phvul.008G007100 Phaseolus vulgaris HOM05D004610 ORTHO05D001148 8.2e-12 77.0 399 23.3
Oeu016626.1 Olea europaea HOM05D004610 ORTHO05D001148 1.1e-11 76.6 1009 23.4
Psat3g098280 Pisum sativum HOM05D004610 ORTHO05D001148 1.8e-11 75.9 249 24.9
MBI19_g22896_MAGBIO Magnolia biondii HOM05D002110 ORTHO05D001148 3.1e-11 75.1 254 25.2
HPP92_021871 Vanilla planifolia HOM05D004610 ORTHO05D001148 4.1e-11 74.7 368 25.8
Medtr6g018770 Medicago truncatula HOM05D004610 ORTHO05D001148 5.3e-11 74.3 958 22.4
Sabra17G0096000 Salix brachista HOM05D004610 ORTHO05D001148 5.3e-11 74.3 284 25.0
MBI19_g46294_MAGBIO Magnolia biondii HOM05D002110 ORTHO05D001148 9.1e-11 73.6 439 22.8
Ca_04369_v3 Cicer arietinum L. HOM05D004610 ORTHO05D001148 2.0e-10 72.4 944 22.1
VMungo1383G3338 Vigna mungo HOM05D004610 ORTHO05D001148 2.0e-10 72.4 554 22.9
ClCG06G004760 Citrullus lanatus HOM05D002110 ORTHO05D001148 2.6e-10 72.0 259 25.1
TPR.G31531 Trifolium pratense HOM05D004610 ORTHO05D001148 2.6e-10 72.0 261 24.5
Medtr7g082220 Medicago truncatula HOM05D004610 ORTHO05D001148 4.5e-10 71.2 443 21.9
Lj2g0017794 Lotus japonicus HOM05D004610 ORTHO05D001148 7.7e-10 70.5 271 26.2
Sed0002424 Sechium edule HOM05D004610 ORTHO05D001148 7.7e-10 70.5 361 24.7
CiPaw.04G042900 Carya illinoinensis HOM05D004610 ORTHO05D001148 1.3e-09 69.7 261 26.4
MELO3C021285.2 Cucumis melo HOM05D002110 ORTHO05D001148 1.3e-09 69.7 283 24.4
TWI73G0849 Tripterygium wilfordii HOM05D002110 ORTHO05D001148 1.7e-09 69.3 456 23.5
RcHm_v2.0_Chr2g0126071 Rosa chinensis HOM05D004610 ORTHO05D001148 2.2e-09 68.9 264 25.8
Lj2P441T41 Lonicera japonica HOM05D004610 ORTHO05D001148 2.9e-09 68.6 204 23.0
Sed0010663 Sechium edule HOM05D002110 ORTHO05D001148 2.9e-09 68.6 383 24.5
vmacro08075 Vaccinium macrocarpon HOM05D002110 ORTHO05D001148 6.5e-09 67.4 257 25.7
HPP92_011878 Vanilla planifolia HOM05D002110 ORTHO05D001148 6.5e-09 67.4 275 24.4
CSS0027216 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 1.1e-08 66.6 258 26.0
arahy.Tifrunner.gnm1.ann1.LS1PSE Arachis hypogaea HOM05D002110 ORTHO05D001148 4.2e-08 64.7 259 24.7
DCAR_025910 Daucus carota HOM05D004610 ORTHO05D001148 4.2e-08 64.7 933 23.2
Lalb_Chr20g0120991 Lupinus albus HOM05D002110 ORTHO05D001148 4.2e-08 64.7 260 25.0
TWI53G1428 Tripterygium wilfordii HOM05D002110 ORTHO05D001148 4.2e-08 64.7 304 26.3
HPP92_018265 Vanilla planifolia HOM05D002110 ORTHO05D001148 5.5e-08 64.3 370 22.4
arahy.Tifrunner.gnm1.ann1.32S0SQ Arachis hypogaea HOM05D002110 ORTHO05D001148 7.2e-08 63.9 256 24.2
MBI18_g09596_MAGBIO Magnolia biondii HOM05D002110 ORTHO05D001148 7.2e-08 63.9 369 24.9
QL06p011361 Quercus lobata HOM05D002110 ORTHO05D001148 1.6e-07 62.8 337 22.3
PSO761G0478 Papaver somniferum HOM05D002110 ORTHO05D001148 2.1e-07 62.4 299 27.1
PSO210G7621 Papaver somniferum HOM05D002110 ORTHO05D001148 2.7e-07 62.0 334 24.0
Duzib052G1132 Durio zibethinus HOM05D002110 ORTHO05D001148 3.6e-07 61.6 342 21.6
CANSAT78G0943 Cannabis sativa HOM05D004610 ORTHO05D001148 4.7e-07 61.2 251 24.7
SGA_v2.0_scaffold115G32105 Striga asiatica HOM05D004610 ORTHO05D001148 4.7e-07 61.2 902 22.6
Psat1g081040 Pisum sativum HOM05D004610 ORTHO05D001148 8.0e-07 60.5 928 22.8
Dinv44317 Davidia involucrata HOM05D002110 ORTHO05D001148 1.8e-06 59.3 257 23.7
Potri.008G108600 Populus trichocarpa HOM05D002110 ORTHO05D001148 1.8e-06 59.3 348 22.4
Prupe.1G125400 Prunus persica HOM05D002110 ORTHO05D001148 1.8e-06 59.3 287 22.6
AUR62016148 Chenopodium quinoa HOM05D002110 ORTHO05D001148 2.3e-06 58.9 293 23.9
PSO210G6724 Papaver somniferum HOM05D002110 ORTHO05D001148 2.3e-06 58.9 302 27.2
AUR62035064 Chenopodium quinoa HOM05D002110 ORTHO05D001148 3.0e-06 58.5 265 24.9
AUR62042948 Chenopodium quinoa HOM05D002110 ORTHO05D001148 3.0e-06 58.5 265 24.9
Potri.T171201 Populus trichocarpa HOM05D002110 ORTHO05D001148 3.0e-06 58.5 348 22.1
Ciclev10004258m.g Citrus clementina HOM05D002110 ORTHO05D001148 3.9e-06 58.2 255 22.7
ATR0706G239 Amborella trichopoda HOM05D002110 ORTHO05D001148 5.2e-06 57.8 213 25.8
Oeu019953.1 Olea europaea HOM05D002110 ORTHO05D001148 5.2e-06 57.8 154 26.6
PGR004G0387 Punica granatum HOM05D004610 ORTHO05D001148 5.2e-06 57.8 142 27.5
Rhsim04G0232500 Rhododendron simsii HOM05D002110 ORTHO05D001148 5.2e-06 57.8 249 24.1
TPR.G30869 Trifolium pratense HOM05D002110 ORTHO05D001148 5.2e-06 57.8 345 23.2
Duzib212G0250 Durio zibethinus HOM05D002110 ORTHO05D001148 6.7e-06 57.4 431 21.8
Phvul.003G110900 Phaseolus vulgaris HOM05D002110 ORTHO05D001148 6.7e-06 57.4 264 24.2
THA.LOC104822621 Tarenaya hassleriana HOM05D004610 ORTHO05D001148 6.7e-06 57.4 251 26.7
TAR622G0578 Trochodendron aralioides HOM05D004610 ORTHO05D001148 6.7e-06 57.4 116 39.7


User provided reference genes

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