Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb124260 Zea mays HOM05D001886 ORTHO05D004007 4.9e-70 267.7 137 100.0
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 1.7e-17 93.2 121 48.8
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 5.3e-16 88.2 119 46.2
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 2.7e-15 85.9 110 47.3
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 2.7e-15 85.9 110 46.4
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 3.5e-15 85.5 108 47.2
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 7.7e-15 84.3 113 43.4
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 1.7e-14 83.2 111 45.9
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 2.2e-14 82.8 118 47.5
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 2.9e-14 82.4 109 45.0
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 2.9e-14 82.4 112 47.3
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 2.9e-14 82.4 112 43.8
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.8e-14 82.0 112 47.3
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.8e-14 82.0 112 47.3
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 3.8e-14 82.0 110 42.7
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 8.5e-14 80.9 112 46.4
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 8.5e-14 80.9 113 46.0
HPP92_018060 Vanilla planifolia HOM05D001886 ORTHO05D004007 8.5e-14 80.9 116 43.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.1e-13 80.5 112 44.6
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 1.1e-13 80.5 109 45.9
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 1.9e-13 79.7 106 44.3
HPP92_006604 Vanilla planifolia HOM05D001886 ORTHO05D004007 2.5e-13 79.3 107 41.1
HPP92_018051 Vanilla planifolia HOM05D001886 ORTHO05D004007 2.5e-13 79.3 113 44.2
Gohir.D09G153200 Gossypium hirsutum HOM05D001886 ORTHO05D004007 7.2e-13 77.8 109 45.0
Gorai.006G174700 Gossypium raimondii HOM05D001886 ORTHO05D004007 7.2e-13 77.8 109 45.0
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 9.4e-13 77.4 109 46.8
Thecc.05G043600 Theobroma cacao HOM05D001886 ORTHO05D004007 1.2e-12 77.0 119 42.9
Gohir.A09G157900 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.6e-12 76.6 109 44.0
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 3.6e-12 75.5 112 46.4
Duzib093G1578 Durio zibethinus HOM05D001886 ORTHO05D004007 3.6e-12 75.5 109 43.1
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 3.6e-12 75.5 109 41.3
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 4.7e-12 75.1 110 42.7
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 4.7e-12 75.1 110 42.7
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.1e-12 74.7 104 41.3
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 6.1e-12 74.7 122 41.8
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 6.1e-12 74.7 125 46.4
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 1.0e-11 73.9 109 44.0
THA.LOC104823422 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 1.0e-11 73.9 109 42.2
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 1.4e-11 73.6 113 40.7
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 2.3e-11 72.8 113 40.7
Cpa.g.sc188.23 Carica papaya HOM05D001886 ORTHO05D004007 3.0e-11 72.4 124 41.9
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 3.0e-11 72.4 112 42.9
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 4.0e-11 72.0 110 42.7
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 6.8e-11 71.2 92 51.1
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 6.8e-11 71.2 104 46.2
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 8.8e-11 70.9 115 40.0
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 1.2e-10 70.5 109 40.4
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 1.2e-10 70.5 115 37.4
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 2.0e-10 69.7 106 40.6
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.6e-10 69.3 108 41.7
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 2.6e-10 69.3 109 41.3
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 4.4e-10 68.6 109 39.4
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 4.4e-10 68.6 112 39.3
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 4.4e-10 68.6 115 37.4
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 5.7e-10 68.2 108 38.9
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 5.7e-10 68.2 109 39.4
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 5.7e-10 68.2 110 44.5
Sc20g0004970 Simmondsia chinensis HOM05D001886 ORTHO05D004007 5.7e-10 68.2 104 45.2
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 7.5e-10 67.8 106 39.6
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 9.8e-10 67.4 109 41.3
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 9.8e-10 67.4 114 37.7
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 1.3e-09 67.0 108 41.7
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 1.3e-09 67.0 109 39.4
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 1.3e-09 67.0 122 41.0
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 1.3e-09 67.0 106 36.8
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.7e-09 66.6 110 40.9
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 1.7e-09 66.6 110 40.0
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 1.7e-09 66.6 108 41.7
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 1.7e-09 66.6 106 37.7
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 2.2e-09 66.2 109 41.3
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 2.2e-09 66.2 109 41.3
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 2.2e-09 66.2 109 41.3
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 2.2e-09 66.2 110 40.9
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 2.2e-09 66.2 112 40.2
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 3.7e-09 65.5 109 40.4
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 3.7e-09 65.5 109 41.3
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 3.7e-09 65.5 109 41.3
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 3.7e-09 65.5 124 37.9
FAN09G0249 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.7e-09 65.5 109 38.5
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.7e-09 65.5 108 41.7
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.7e-09 65.5 109 38.5
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 3.7e-09 65.5 121 38.8
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 3.7e-09 65.5 108 42.6
Carub.0004s1945 Capsella rubella HOM05D001886 ORTHO05D004007 4.8e-09 65.1 107 41.1
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 4.8e-09 65.1 118 40.7
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 4.8e-09 65.1 117 40.2
FvH4_6g14180 Fragaria vesca HOM05D001886 ORTHO05D004007 4.8e-09 65.1 109 38.5
FAN05G2305 Fragaria x ananassa HOM05D001886 ORTHO05D004007 4.8e-09 65.1 109 38.5
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 6.3e-09 64.7 108 45.4
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 1.1e-08 63.9 109 40.4
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.1e-08 63.9 117 39.3
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.1e-08 63.9 105 41.0
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 1.1e-08 63.9 105 41.0
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.4e-08 63.5 122 36.1
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 1.8e-08 63.2 121 36.4
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.8e-08 63.2 112 37.5
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.4e-08 62.8 114 39.5
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 2.4e-08 62.8 122 36.9
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 2.4e-08 62.8 121 38.8
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 3.1e-08 62.4 106 38.7
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 3.1e-08 62.4 109 38.5
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.1e-08 62.4 107 40.2
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 3.1e-08 62.4 112 38.4
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 4.1e-08 62.0 95 42.1
Atru.chr3.3836 Acer truncatum HOM05D001886 ORTHO05D004007 5.4e-08 61.6 106 42.5
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 5.4e-08 61.6 106 39.6
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 5.4e-08 61.6 102 41.2
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 7.0e-08 61.2 106 37.7
Zm00001eb028760 Zea mays HOM05D001886 ORTHO05D004007 7.0e-08 61.2 99 42.4
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 9.1e-08 60.8 109 36.7
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 1.2e-07 60.5 107 39.3
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 1.6e-07 60.1 106 37.7
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 1.6e-07 60.1 102 37.3
BcaB02g06704 Brassica carinata HOM05D001886 ORTHO05D004007 2.7e-07 59.3 114 43.9
CSS0006045 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 2.7e-07 59.3 110 41.8
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 7.7e-07 57.8 102 44.1
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 7.7e-07 57.8 102 44.1
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 7.7e-07 57.8 99 40.4
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 7.7e-07 57.8 122 37.7
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 1.0e-06 57.4 123 32.5
Pp3c26_1460 Physcomitrium patens HOM05D001886 ORTHO05D004007 1.3e-06 57.0 111 36.9
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 2.3e-06 56.2 102 38.2
BcaC07g42494 Brassica carinata HOM05D001886 ORTHO05D004007 2.9e-06 55.8 97 44.3
BolC5t29341H Brassica oleracea HOM05D001886 ORTHO05D015777 2.9e-06 55.8 114 41.2
C05p05710 Brassica napus HOM05D001886 ORTHO05D004007 3.8e-06 55.5 114 41.2
Thhalv10017464m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 3.8e-06 55.5 93 43.0
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 5.0e-06 55.1 103 35.0
Sed0021579 Sechium edule HOM05D001886 ORTHO05D004007 5.0e-06 55.1 110 35.5
A09p66220 Brassica napus HOM05D001886 ORTHO05D004007 6.6e-06 54.7 97 43.3
Thhalv10009977m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 6.6e-06 54.7 110 43.6


User provided reference genes

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