Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 2.8e-247 858.2 444 100.0
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 4.0e-161 572.0 393 72.0
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.0e-160 569.7 402 70.4
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 9.7e-160 567.4 404 69.3
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 8.3e-159 564.3 402 70.1
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.1e-158 563.9 401 69.8
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 2.4e-158 562.8 429 66.2
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 7.0e-158 561.2 406 68.2
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 2.9e-156 555.8 397 70.5
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 6.5e-156 554.7 432 64.8
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 8.5e-156 554.3 434 64.5
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 8.5e-156 554.3 396 69.9
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 1.9e-155 553.1 398 69.1
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 1.9e-155 553.1 401 68.6
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.2e-155 552.0 396 69.4
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 7.2e-155 551.2 399 69.2
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 7.2e-155 551.2 430 66.0
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 9.4e-155 550.8 410 68.3
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.2e-154 550.4 416 66.1
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 1.6e-154 550.1 410 68.5
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.6e-154 550.1 388 70.6
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 2.1e-154 549.7 390 70.0
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 3.6e-154 548.9 435 66.7
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 8.0e-154 547.7 414 66.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 8.0e-154 547.7 420 65.2
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 8.0e-154 547.7 408 67.2
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 1.0e-153 547.4 404 67.6
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 1.0e-153 547.4 447 63.8
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 1.4e-153 547.0 398 68.1
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 2.3e-153 546.2 408 65.9
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.3e-153 546.2 392 68.9
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 3.0e-153 545.8 403 68.5
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 3.0e-153 545.8 443 62.1
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 4.0e-153 545.4 407 66.8
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 5.2e-153 545.0 402 67.7
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 5.2e-153 545.0 402 67.4
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 8.8e-153 544.3 423 65.0
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 1.5e-152 543.5 396 67.9
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 1.5e-152 543.5 397 67.5
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 2.6e-152 542.7 401 69.8
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.6e-152 542.7 390 69.7
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 4.4e-152 542.0 403 68.5
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 5.7e-152 541.6 406 67.0
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 7.5e-152 541.2 442 61.8
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 9.8e-152 540.8 420 65.5
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 1.3e-151 540.4 432 63.2
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 1.7e-151 540.0 415 66.7
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 1.7e-151 540.0 398 67.3
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 2.2e-151 539.7 396 67.2
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.7e-151 538.9 392 67.9
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.1e-150 537.3 398 67.3
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.4e-150 537.0 399 69.2
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 3.1e-150 535.8 407 66.6
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 4.1e-150 535.4 413 64.6
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 9.1e-150 534.3 396 67.2
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 9.1e-150 534.3 394 69.0
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 9.1e-150 534.3 392 66.8
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.2e-149 533.9 398 68.6
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 2.7e-149 532.7 390 67.4
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 7.7e-149 531.2 418 64.8
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.3e-148 530.4 397 66.8
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 2.3e-148 529.6 404 66.6
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.9e-148 529.3 411 65.5
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 3.8e-148 528.9 406 65.5
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 5.0e-148 528.5 405 65.4
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 1.1e-147 527.3 363 71.9
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 1.1e-147 527.3 434 63.8
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 1.5e-147 526.9 428 64.3
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.9e-147 526.6 398 67.6
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 5.5e-147 525.0 408 66.9
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 7.2e-147 524.6 426 63.1
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.6e-146 523.5 420 64.8
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 8.0e-146 521.2 396 66.9
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.0e-145 520.8 400 64.8
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 1.4e-145 520.4 401 65.1
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 2.3e-145 519.6 404 63.6
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 1.7e-143 513.5 397 65.2
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 2.8e-143 512.7 404 65.3
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.8e-143 512.7 505 54.5
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 4.1e-142 508.8 426 62.4
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 5.4e-142 508.4 427 61.8
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.6e-141 506.9 385 64.7
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 1.0e-140 504.2 377 65.3
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 4.3e-139 498.8 491 55.4
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 1.2e-138 497.3 408 63.2
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 4.4e-136 488.8 426 60.3
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.7e-135 486.9 376 65.2
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 4.1e-134 482.3 435 58.6
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 2.7e-133 479.6 391 61.1
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 1.7e-132 476.9 361 68.7
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.5e-131 473.8 340 70.3
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 2.1e-130 469.9 408 60.8
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 2.1e-130 469.9 408 60.8
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 2.1e-130 469.9 331 71.0
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 9.8e-128 461.1 394 58.9
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 4.1e-118 429.1 318 67.3
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 7.3e-115 418.3 312 68.3
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.6e-109 400.6 294 66.7
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.6e-106 389.4 403 52.6
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 6.2e-106 388.7 398 53.5
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 6.9e-105 385.2 289 68.5
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 5.8e-104 382.1 394 54.6
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 1.3e-98 364.4 328 59.5
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.4e-96 356.3 252 71.8
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.3e-92 344.4 387 49.1
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.0e-81 306.2 332 52.7
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.8e-76 290.8 391 45.8
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 2.0e-72 277.3 197 71.1
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.5e-72 276.2 194 71.1
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 1.6e-69 267.7 212 63.7
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.1e-67 261.5 382 39.3
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.2e-46 190.3 120 74.2
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 4.2e-46 189.9 118 83.9
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.0e-43 181.0 111 75.7
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.0e-43 181.0 118 72.0
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.4e-35 153.3 102 69.6
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.7e-34 150.2 102 68.6
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.1e-33 148.7 103 75.7
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.1e-33 145.6 102 66.7
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 3.4e-27 127.1 95 65.3
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 1.7e-26 124.8 110 59.1
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.9e-22 111.3 90 57.8
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 4.3e-22 110.2 78 61.5
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 4.0e-20 103.6 96 54.2
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.0e-19 101.3 82 58.5
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 3.7e-18 97.1 72 59.7
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 5.4e-17 93.2 102 52.0
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 3.9e-15 87.0 104 50.0
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 2.8e-13 80.9 49 67.3
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 5.2e-12 76.6 205 36.6
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 2.0e-11 74.7 51 66.7
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 1.3e-10 72.0 74 51.4
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 2.7e-08 64.3 41 70.7


User provided reference genes

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