Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 4.1e-206 721.8 587 100.0
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 4.5e-72 276.6 590 58.1
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 7.3e-62 242.7 587 39.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.4e-36 158.7 546 30.6
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.9e-34 151.0 529 26.1
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 4.9e-34 150.2 584 37.7
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 4.9e-34 150.2 305 33.4
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 5.4e-33 146.7 302 34.1
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.1e-32 144.8 367 30.2
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 3.5e-32 144.1 305 35.1
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.3e-31 141.4 302 33.4
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.0e-31 141.0 386 29.8
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 8.7e-31 139.4 428 28.5
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 3.1e-28 131.0 380 29.5
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 9.0e-28 129.4 586 29.9
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 2.0e-27 128.3 537 32.6
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.4e-27 127.5 408 27.5
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 3.4e-27 127.5 408 28.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 9.9e-27 125.9 591 35.9
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 9.9e-27 125.9 376 27.9
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.7e-26 125.2 534 32.6
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.2e-26 124.8 382 30.4
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.1e-25 122.5 555 35.3
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.4e-25 122.1 419 28.4
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.9e-25 121.7 394 27.2
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.3e-25 119.4 408 31.1
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.2e-24 119.0 387 26.9
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 4.6e-24 117.1 583 24.4
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.6e-24 117.1 377 27.1
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.6e-24 117.1 534 33.1
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 6.0e-24 116.7 279 33.0
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 3.0e-23 114.4 370 26.8
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 3.0e-23 114.4 375 27.5
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.9e-22 111.7 371 25.3
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 7.4e-22 109.8 378 30.2
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 8.1e-21 106.3 373 34.3
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 2.4e-20 104.8 283 30.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 4.0e-20 104.0 382 27.5
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 6.9e-20 103.2 279 30.8
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 3.4e-19 100.9 544 39.3
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 9.9e-19 99.4 371 24.8
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 9.9e-19 99.4 400 31.0
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.9e-17 95.1 304 26.6
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.2e-17 94.4 217 31.3
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 5.5e-17 93.6 371 27.2
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 7.1e-17 93.2 315 27.6
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 7.1e-17 93.2 376 32.2
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.6e-16 92.0 376 31.9
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 2.7e-16 91.3 408 22.5
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 3.5e-16 90.9 305 27.2
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.6e-16 90.5 371 25.3
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 7.9e-16 89.7 403 24.3
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 7.9e-16 89.7 306 28.4
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 3.9e-15 87.4 265 28.3
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 3.9e-15 87.4 395 24.3
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 6.7e-15 86.7 273 27.5
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 8.7e-15 86.3 270 25.9
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.5e-14 84.7 255 31.4
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 3.3e-14 84.3 305 27.2
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 7.4e-14 83.2 202 27.2
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 9.6e-14 82.8 583 40.1
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 9.6e-14 82.8 239 28.9
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 1.3e-13 82.4 290 26.2
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 1.6e-13 82.0 305 27.2
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 2.1e-13 81.6 375 30.7
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.1e-13 81.6 115 41.7
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 8.2e-13 79.7 385 23.4
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.1e-12 79.3 584 33.6
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.4e-12 79.0 376 30.1
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 4.0e-12 77.4 117 43.6
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 5.3e-12 77.0 221 28.5
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 9.0e-12 76.3 591 23.5
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.5e-11 75.5 408 31.9
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 2.6e-11 74.7 376 28.7
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.6e-11 74.7 288 25.7
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 7.6e-11 73.2 276 27.2
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.7e-10 72.0 389 22.4
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.7e-10 72.0 275 24.4
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.7e-10 72.0 275 24.4
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.7e-10 72.0 275 24.4
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.2e-10 71.6 125 38.4
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.2e-10 71.6 305 30.2
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.9e-10 71.2 298 24.8
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 4.9e-10 70.5 269 25.3
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.5e-10 70.1 226 26.5
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.1e-09 69.3 377 40.8
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.1e-09 69.3 232 26.3
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.4e-09 68.9 603 27.2
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.9e-09 68.6 283 27.2
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.5e-09 68.2 158 32.3
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 3.2e-09 67.8 583 27.4
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 5.5e-09 67.0 305 25.6
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 7.1e-09 66.6 583 36.9
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 7.1e-09 66.6 373 23.9
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.2e-08 65.9 272 23.2
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.6e-08 65.5 302 30.5
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 6.0e-08 63.5 273 26.7
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 7.9e-08 63.2 176 25.6
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.0e-07 62.8 184 25.0
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.3e-07 62.4 329 32.2
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 5.1e-07 60.5 580 35.7
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 8.7e-07 59.7 395 22.5
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 8.7e-07 59.7 301 21.6
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.5e-06 58.9 408 21.6
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.5e-06 58.9 302 23.8
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.9e-06 58.5 169 42.6
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.3e-06 57.8 174 33.9
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 4.3e-06 57.4 257 24.1
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.3e-06 57.4 273 23.8


User provided reference genes

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