Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 2292.3 1161 100.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 2168.7 1161 94.9
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 2065.8 1163 90.3
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1673.7 1174 74.8
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1655.6 1180 72.8
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1654.0 1173 73.1
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1649.0 1179 72.5
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1648.3 1179 72.5
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1644.0 1172 72.6
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1634.8 1179 72.3
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1625.1 1183 71.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1622.8 1179 71.5
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1622.8 1176 72.4
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1616.7 1182 71.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1614.7 1178 71.5
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1614.0 1186 71.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1611.7 1187 70.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1611.3 1175 71.2
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1610.9 1178 71.6
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1175 71.1
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1605.9 1175 71.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1600.5 1183 70.3
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1598.9 1178 71.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1595.5 1220 68.9
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1594.7 1220 68.9
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1593.9 1216 68.9
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1593.6 1176 71.7
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1591.6 1180 70.5
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1589.7 1182 70.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1588.2 1220 68.7
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1585.1 1183 70.2
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1584.7 1173 70.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1581.2 1181 70.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1580.5 1170 70.9
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1580.1 1169 71.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1579.3 1184 70.8
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1577.8 1178 70.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1575.1 1181 69.8
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1572.4 1179 71.1
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1572.0 1178 69.3
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1570.1 1177 69.5
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1178 70.3
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1566.2 1178 70.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1565.8 1231 67.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1564.7 1180 69.3
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1564.7 1179 69.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1564.3 1214 68.7
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1563.5 1177 69.6
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1562.7 1214 68.7
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1562.4 1172 70.0
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1561.2 1195 69.3
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1560.4 1180 69.2
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1559.7 1158 71.3
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1555.8 1172 69.9
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1555.8 1197 68.8
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1553.1 1170 69.8
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1552.3 1170 69.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1552.0 1148 71.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1551.6 1235 66.6
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1551.6 1174 69.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1551.2 1172 69.3
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1550.0 1236 66.7
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1549.6 1169 69.8
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1549.3 1173 69.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1546.2 1176 68.6
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1543.5 1176 68.5
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1543.1 1172 68.9
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1540.8 1187 68.5
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1540.4 1217 67.4
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1540.0 1178 69.0
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1539.2 1167 69.5
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1536.2 1165 69.5
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1535.0 1176 68.7
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1533.5 1214 67.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1531.5 1174 68.7
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1529.6 1178 68.2
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1527.3 1175 68.1
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1526.1 1178 68.0
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1525.8 1174 68.1
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1524.6 1224 67.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1522.7 1180 68.0
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1522.7 1174 68.4
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1522.3 1175 67.8
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1521.1 1174 68.1
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1521.1 1165 68.7
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1521.1 1179 67.8
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1520.8 1171 68.2
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1520.8 1174 68.4
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1519.6 1172 67.7
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1519.6 1171 67.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1519.2 1182 67.7
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1518.8 1174 68.1
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1518.8 1173 68.1
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1518.4 1172 67.7
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1517.7 1178 67.9
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1516.9 1178 67.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1516.9 1174 69.0
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1513.4 1179 67.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1512.7 1182 67.1
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1510.4 1176 68.2
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1509.6 1172 67.9
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1508.8 1210 66.4
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1505.0 1173 68.3
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1504.2 1170 68.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1502.3 1183 67.4
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1501.1 1205 67.0
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1495.3 1179 67.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1488.4 1165 67.4
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1488.0 1238 65.1
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1473.8 1175 67.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1472.6 1176 66.6
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1468.0 1099 70.1
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1450.6 1187 66.0
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1449.1 1079 70.5
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1448.3 1158 66.9
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1439.5 1185 65.7
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1426.8 1206 64.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1424.1 1111 68.0
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1322.8 1170 61.9
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1312.4 955 72.1
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1298.1 1068 65.4
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1260.0 963 69.6
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1218.0 948 69.4
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1201.4 970 66.4
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1197.6 1041 64.2
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1170.6 948 66.2
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1163.7 1158 56.0
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1110.9 886 66.9
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1094.0 804 70.8
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.1e-307 1059.3 987 61.2
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.2e-305 1053.5 821 68.6
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 5.6e-300 1034.6 976 60.1
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.3e-296 1023.5 1172 49.5
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 5.1e-293 1011.5 1159 51.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 1.6e-286 989.9 813 65.2
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.9e-280 969.1 1209 46.8
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 6.1e-278 961.4 802 65.8
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.3e-260 902.5 543 82.0
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.0e-256 891.0 726 66.7
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.3e-253 879.8 713 67.3
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 3.4e-212 743.0 607 67.2
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.1e-197 694.9 434 79.5
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 3.0e-152 543.9 363 74.9
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 4.0e-128 463.8 310 75.2
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 8.6e-123 446.0 310 71.6
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 3.3e-122 444.1 310 71.3
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 2.2e-118 431.4 810 36.3
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 5.6e-114 416.8 890 36.1
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 4.7e-113 413.7 1325 28.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.0e-107 394.4 286 69.6
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.1e-104 384.4 285 69.1
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.4e-87 327.4 502 44.4
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 6.4e-86 323.6 232 70.3
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 4.3e-74 284.3 201 71.6
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 3.1e-72 278.1 273 57.9
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.7e-70 272.3 206 64.6
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.8e-67 262.3 184 72.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 9.6e-66 256.5 191 64.9
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 2.2e-62 245.4 142 80.3
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 1.1e-61 243.0 174 72.4
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 3.2e-61 241.5 250 56.0
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 5.0e-54 217.6 186 61.3
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 4.6e-52 211.1 132 81.8
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.0e-46 193.4 118 83.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 5.5e-45 187.6 125 74.4
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 3.4e-39 168.3 148 60.8
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 4.7e-36 157.9 92 88.0
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 3.2e-29 135.2 88 70.5
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 3.2e-29 135.2 88 69.3
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 3.2e-29 135.2 88 69.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.5e-21 109.0 79 73.4
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.7e-17 96.3 82 61.0
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 3.5e-15 88.6 100 54.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.9e-13 82.8 82 53.7
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 2.1e-12 79.3 61 67.2
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 6.1e-12 77.8 122 41.8
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 1.4e-08 66.6 78 38.5


User provided reference genes

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