Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 1.5e-291 1005.4 486 100.0
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 6.6e-218 760.8 482 75.7
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 1.9e-124 450.3 496 47.2
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 6.3e-120 435.3 493 45.8
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 1.3e-117 427.6 492 47.2
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 4.2e-116 422.5 490 47.1
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 1.2e-115 421.0 490 45.9
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 1.0e-114 417.9 492 46.7
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 1.4e-114 417.5 497 44.7
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 5.2e-114 415.6 492 47.6
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 8.8e-114 414.8 484 45.7
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 8.8e-114 414.8 491 46.6
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 2.6e-113 413.3 492 45.7
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 1.7e-112 410.6 500 46.4
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 1.4e-111 407.5 496 45.8
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 2.4e-111 406.8 491 45.2
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 3.1e-111 406.4 491 44.8
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 5.4e-111 405.6 497 46.3
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 9.2e-111 404.8 497 44.3
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 1.2e-110 404.4 493 45.2
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 2.0e-110 403.7 484 46.1
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 2.7e-110 403.3 493 43.2
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 4.5e-110 402.5 487 45.8
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 1.3e-109 401.0 476 46.2
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 1.5e-108 397.5 487 45.8
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 5.6e-108 395.6 490 44.5
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 2.1e-107 393.7 498 44.6
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 2.8e-107 393.3 487 47.2
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 3.6e-107 392.9 489 45.4
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 4.7e-107 392.5 488 44.7
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 6.1e-107 392.1 496 44.4
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 1.4e-106 391.0 491 44.4
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 1.2e-105 387.9 486 44.7
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 2.0e-105 387.1 494 44.7
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 5.7e-105 385.6 445 46.3
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 1.7e-104 384.0 488 44.9
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 2.2e-104 383.6 566 40.5
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 2.9e-104 383.3 501 43.5
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 3.7e-104 382.9 499 43.9
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 4.9e-104 382.5 490 44.5
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 6.4e-104 382.1 466 45.5
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 1.1e-103 381.3 501 43.1
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 1.8e-103 380.6 501 43.7
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 1.8e-103 380.6 473 44.6
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 5.4e-103 379.0 501 43.5
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 5.4e-103 379.0 485 44.3
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 9.2e-103 378.3 477 44.9
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.2e-102 377.9 489 44.6
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.6e-102 377.5 485 43.5
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 5.9e-102 375.6 483 43.7
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 1.7e-101 374.0 592 39.2
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 5.0e-101 372.5 500 42.8
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 6.6e-101 372.1 500 42.8
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 8.6e-101 371.7 487 43.5
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 2.5e-100 370.2 491 43.6
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 2.1e-99 367.1 486 43.4
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 2.1e-99 367.1 488 41.8
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 4.7e-99 365.9 480 42.7
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 2.6e-97 360.1 479 43.6
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 9.8e-97 358.2 471 43.3
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 1.9e-95 354.0 530 40.2
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 5.4e-95 352.4 494 41.9
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 5.4e-95 352.4 461 43.4
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 2.7e-94 350.1 494 41.3
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 7.8e-94 348.6 515 41.9
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 1.7e-93 347.4 488 42.4
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 1.9e-92 344.0 398 48.0
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 3.1e-90 336.7 503 42.1
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 3.1e-90 336.7 491 42.0
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 2.0e-89 334.0 507 41.8
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 7.5e-89 332.0 349 49.9
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 1.3e-88 331.3 578 37.2
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.7e-88 330.9 456 41.7
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 4.9e-88 329.3 456 41.4
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 3.2e-87 326.6 401 45.4
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 6.6e-85 318.9 433 42.3
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.6e-83 313.2 438 41.3
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 4.1e-79 299.7 471 36.9
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 1.2e-78 298.1 354 47.5
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 2.1e-75 287.3 349 47.9
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 3.6e-75 286.6 415 43.4
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 3.1e-74 283.5 482 37.8
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 1.3e-72 278.1 502 35.7
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 1.9e-71 274.2 520 35.4
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 3.9e-69 266.5 133 97.0
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 1.3e-64 251.5 367 43.1
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 5.4e-63 246.1 565 32.9
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 3.9e-61 240.0 317 44.8
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 1.1e-55 221.9 414 35.5
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 2.1e-54 217.6 290 45.9
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 5.3e-42 176.4 220 46.8
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 6.7e-37 159.5 197 44.2
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 1.2e-30 138.7 225 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 2.4e-26 124.4 174 37.4
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 9.1e-18 95.9 114 38.6
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 1.3e-16 92.0 125 39.2
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.7e-16 91.7 130 41.5
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 2.7e-14 84.3 201 34.3
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 1.8e-13 81.6 125 44.8
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 5.7e-12 76.6 157 35.7
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 2.4e-10 71.2 74 45.9
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 4.5e-09 67.0 60 53.3
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 7.7e-09 66.2 61 49.2
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 1.5e-07 62.0 72 38.9
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 4.2e-07 60.5 65 44.6
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 4.2e-07 60.5 175 29.1
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 4.2e-07 60.5 175 29.1
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 5.5e-07 60.1 365 22.5
CBR_g12059 Chara braunii HOM05D000505 ORTHO05D000301 9.4e-07 59.3 107 29.9
Aqoxy3G02567 Aquilegia oxysepala HOM05D000526 ORTHO05D000956 1.6e-06 58.5 297 21.9
Cre02.g078150 Chlamydomonas reinhardtii HOM05D002853 ORTHO05D003030 3.6e-06 57.4 118 31.4
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 8.0e-06 56.2 237 26.2
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 8.0e-06 56.2 237 24.9


User provided reference genes

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