Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 1.8e-102 375.9 187 100.0
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 5.1e-102 374.4 187 99.5
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 5.1e-102 374.4 187 99.5
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 9.6e-101 370.2 186 98.9
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 1.4e-99 366.3 186 97.8
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 4.8e-92 341.3 169 100.0
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 1.1e-91 340.1 184 90.2
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 4.1e-91 338.2 169 99.4
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 4.1e-91 338.2 169 98.8
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 6.9e-91 337.4 169 98.2
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 5.5e-80 301.2 187 84.5
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 2.1e-79 299.3 166 86.1
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 6.1e-79 297.7 157 89.8
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 7.9e-79 297.4 155 91.6
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.8e-78 296.2 155 91.6
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 1.8e-78 296.2 155 91.6
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 2.3e-78 295.8 156 90.4
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 3.0e-78 295.4 155 91.0
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 3.9e-78 295.0 155 90.3
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 5.1e-78 294.7 160 88.1
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 6.7e-78 294.3 155 91.0
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 8.8e-78 293.9 166 87.3
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 8.8e-78 293.9 164 86.6
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.1e-77 293.5 164 85.4
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 1.1e-77 293.5 157 87.9
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 1.1e-77 293.5 157 88.5
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 2.5e-77 292.4 155 90.3
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 3.3e-77 292.0 160 85.0
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.3e-77 292.0 164 86.0
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 3.3e-77 292.0 161 85.7
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 5.7e-77 291.2 155 89.0
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 5.7e-77 291.2 154 90.3
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 9.7e-77 290.4 154 90.3
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 1.3e-76 290.0 179 81.0
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.3e-76 290.0 167 83.2
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.3e-76 290.0 155 90.3
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.3e-76 290.0 155 90.3
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 1.7e-76 289.7 172 82.6
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 1.7e-76 289.7 172 82.6
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 1.7e-76 289.7 155 87.7
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 2.2e-76 289.3 155 89.0
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 3.7e-76 288.5 155 86.5
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 3.7e-76 288.5 160 86.2
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 3.7e-76 288.5 155 88.4
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 3.7e-76 288.5 155 89.0
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 4.8e-76 288.1 167 83.2
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 4.8e-76 288.1 160 86.2
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 1.1e-75 287.0 160 85.0
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 1.4e-75 286.6 160 84.4
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 1.4e-75 286.6 154 87.7
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 1.4e-75 286.6 155 88.4
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 1.4e-75 286.6 155 88.4
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 1.8e-75 286.2 156 87.8
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 1.8e-75 286.2 168 82.1
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 2.4e-75 285.8 155 87.7
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.4e-75 285.8 155 87.7
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.4e-75 285.8 155 87.7
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.4e-75 285.8 155 87.7
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 2.4e-75 285.8 155 87.7
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.1e-75 285.4 154 89.0
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 4.1e-75 285.0 156 87.2
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 5.3e-75 284.6 167 81.4
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 5.3e-75 284.6 160 84.4
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.9e-75 284.3 177 79.1
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.9e-75 284.3 177 79.1
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 9.1e-75 283.9 156 86.5
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 9.1e-75 283.9 162 82.7
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 9.1e-75 283.9 161 85.1
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 9.1e-75 283.9 167 82.6
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 1.2e-74 283.5 156 87.2
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 1.5e-74 283.1 165 82.4
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 1.5e-74 283.1 153 88.2
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 2.0e-74 282.7 154 87.0
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 3.4e-74 282.0 161 82.6
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 4.5e-74 281.6 155 85.8
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 4.5e-74 281.6 161 82.6
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.9e-74 281.2 154 87.7
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 7.7e-74 280.8 161 82.6
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 7.7e-74 280.8 154 87.0
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.7e-74 280.8 155 85.2
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 7.7e-74 280.8 161 83.9
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 1.0e-73 280.4 161 82.0
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 1.0e-73 280.4 177 76.3
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 1.3e-73 280.0 155 85.2
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 2.2e-73 279.3 161 82.0
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 2.9e-73 278.9 158 83.5
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 3.8e-73 278.5 155 85.8
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 3.8e-73 278.5 158 84.2
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 5.0e-73 278.1 155 84.5
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 5.0e-73 278.1 155 85.2
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 5.0e-73 278.1 155 85.2
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 8.5e-73 277.3 155 86.5
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 8.5e-73 277.3 158 83.5
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.9e-72 276.2 155 85.2
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 5.5e-72 274.6 155 83.9
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 5.5e-72 274.6 155 83.9
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 5.5e-72 274.6 155 85.2
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-71 273.5 149 88.6
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 2.7e-71 272.3 155 83.2
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 3.6e-71 271.9 152 86.8
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 4.7e-71 271.6 155 83.2
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 7.9e-71 270.8 152 84.9
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 3.0e-70 268.9 146 88.4
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.1e-69 266.9 138 92.0
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 1.1e-69 266.9 182 74.2
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.8e-68 262.3 145 86.2
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 1.4e-67 260.0 155 80.6
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 3.8e-65 251.9 144 84.0
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 3.8e-65 251.9 154 77.9
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 8.5e-65 250.8 155 75.5
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 2.7e-63 245.7 153 75.2
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 1.4e-59 233.4 155 71.0
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 8.5e-57 224.2 155 71.6
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 5.5e-56 221.5 153 69.9
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 3.0e-54 215.7 153 66.0
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 8.8e-54 214.2 141 75.2
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 2.6e-53 212.6 106 98.1
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 1.0e-49 200.7 130 78.5
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 1.2e-47 193.7 104 86.5
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 1.8e-46 189.9 104 83.7
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 8.8e-46 187.6 116 78.4
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 1.2e-45 187.2 105 83.8
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 1.2e-45 187.2 105 83.8
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 1.5e-45 186.8 105 83.8
Ciclev10002827m.g Citrus clementina HOM05D003336 ORTHO05D003807 1.5e-45 186.8 109 81.7
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 4.9e-44 181.8 116 76.7
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.7e-42 174.5 153 60.8
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 2.3e-41 172.9 96 87.5
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 2.9e-41 172.6 105 79.0
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 2.9e-41 172.6 105 79.0
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 2.9e-41 172.6 105 79.0
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 9.5e-40 167.5 182 51.1
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.8e-39 166.0 98 81.6
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 6.8e-38 161.4 105 76.2
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 6.8e-38 161.4 105 76.2
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.6e-33 144.8 81 85.2
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 3.6e-31 139.0 88 77.3
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.1e-30 136.0 95 72.6
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 8.9e-30 134.4 127 59.1
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-28 130.6 65 93.8
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-28 130.6 65 93.8
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.3e-25 120.6 66 86.4
A08p15940 Brassica napus HOM05D003336 ORTHO05D003807 1.9e-24 116.7 70 81.4
CSS0001716 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.4e-22 110.5 85 67.1
CSS0040178 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.8e-22 110.2 85 67.1
MBI01_g10302_MAGBIO Magnolia biondii HOM05D003336 ORTHO05D003807 1.7e-20 103.6 79 64.6
CSS0040953 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.5e-18 95.9 127 48.0
CSS0007615 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-17 94.0 52 84.6
CSS0023275 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-17 93.6 56 78.6
DCAR_026317 Daucus carota HOM05D003336 ORTHO05D003807 1.9e-16 90.1 52 80.8
Nn1g09612 Nelumbo nucifera HOM05D003336 ORTHO05D003807 1.9e-16 90.1 52 80.8
SEGI_08325 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 8.1e-15 84.7 52 75.0
CSS0049342 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 8.4e-12 74.7 66 60.6
Atru.chr7.305 Acer truncatum HOM05D003336 ORTHO05D003807 2.4e-11 73.2 66 53.0
Atru.chr7.309 Acer truncatum HOM05D003336 ORTHO05D003807 4.6e-10 68.9 62 53.2
FvH4_7g04970 Fragaria vesca HOM05D003336 ORTHO05D003807 1.3e-09 67.4 38 84.2
Duzib175G0004 Durio zibethinus HOM05D003336 ORTHO05D003807 8.6e-09 64.7 59 61.0
C03p84370 Brassica napus HOM05D000924 ORTHO05D001209 1.1e-08 64.3 41 65.9
A08p15930 Brassica napus HOM05D000924 ORTHO05D001209 5.6e-08 62.0 49 63.3
Psat6g173760 Pisum sativum HOM05D003336 ORTHO05D003807 3.1e-06 56.2 52 57.7
FAN17G2067 Fragaria x ananassa HOM05D003336 ORTHO05D003807 5.2e-06 55.5 31 80.6
Atru.chr7.310 Acer truncatum HOM05D000001 ORTHO05D009429 8.9e-06 54.7 32 78.1


User provided reference genes

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