Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 9.2e-259 896.3 446 100.0
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 1.7e-159 566.6 455 65.3
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 1.4e-81 307.8 449 42.3
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 1.0e-71 275.0 447 39.1
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 4.2e-70 269.6 445 38.4
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 5.2e-68 262.7 456 39.0
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 1.7e-66 257.7 445 37.3
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 2.2e-66 257.3 456 37.1
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 4.8e-66 256.1 454 37.4
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 8.2e-66 255.4 443 36.3
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 2.4e-65 253.8 453 37.3
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 3.1e-65 253.4 446 37.2
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 4.1e-65 253.1 444 38.5
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 5.3e-65 252.7 453 38.2
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 5.3e-65 252.7 446 37.4
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 9.1e-65 251.9 451 36.4
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 1.6e-64 251.1 449 36.5
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 2.0e-64 250.8 417 38.1
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 2.2e-63 247.3 446 36.8
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 3.8e-63 246.5 447 37.4
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 3.8e-63 246.5 447 37.4
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 3.8e-63 246.5 447 36.0
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 6.5e-63 245.7 458 36.0
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 1.1e-62 245.0 449 36.7
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 9.4e-62 241.9 456 35.3
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 1.6e-61 241.1 456 36.4
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 2.7e-61 240.4 454 36.8
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 4.7e-61 239.6 457 34.8
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 1.4e-60 238.0 460 36.1
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 2.3e-60 237.3 449 36.5
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 2.3e-60 237.3 452 36.7
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 2.3e-60 237.3 453 36.2
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 1.5e-59 234.6 322 44.7
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 1.5e-59 234.6 320 45.0
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 2.0e-59 234.2 366 40.2
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 3.4e-59 233.4 447 37.6
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 3.4e-59 233.4 453 35.8
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 5.7e-59 232.6 463 35.2
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.3e-58 231.5 456 35.1
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 1.3e-58 231.5 456 34.9
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 4.8e-58 229.6 456 35.1
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 6.3e-58 229.2 457 35.2
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 1.1e-57 228.4 475 33.9
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 9.1e-57 225.3 456 34.4
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 1.2e-56 224.9 449 36.5
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.6e-56 224.6 453 34.7
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.6e-56 224.6 453 34.7
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 2.7e-56 223.8 448 35.7
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 2.7e-56 223.8 455 34.5
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 2.7e-56 223.8 452 35.6
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 7.7e-56 222.2 450 34.2
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 1.0e-55 221.9 448 35.3
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.0e-55 221.9 451 33.9
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 3.8e-55 219.9 450 34.2
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 1.5e-54 218.0 470 33.6
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 4.2e-54 216.5 449 33.9
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 5.5e-54 216.1 444 34.5
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 7.2e-54 215.7 451 35.7
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 4.7e-53 213.0 449 35.2
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 4.7e-53 213.0 444 33.8
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 1.8e-52 211.1 444 33.8
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 5.2e-52 209.5 450 34.2
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 2.6e-51 207.2 448 33.7
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 2.6e-51 207.2 341 36.4
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 4.4e-51 206.5 450 34.4
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 1.7e-50 204.5 485 30.7
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 2.2e-50 204.1 458 33.2
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 1.1e-49 201.8 451 31.0
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 5.0e-47 193.0 281 39.9
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 1.9e-46 191.0 444 31.5
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 9.8e-43 178.7 454 29.5
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 9.8e-43 178.7 454 29.5
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 5.4e-41 172.9 300 38.7
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 1.0e-39 168.7 478 29.5
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 1.9e-38 164.5 267 36.7
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 1.9e-38 164.5 292 38.0
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 7.3e-38 162.5 285 36.8
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 4.4e-35 153.3 319 33.2
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 7.5e-35 152.5 337 31.5
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 3.2e-33 147.1 460 30.9
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 2.7e-32 144.1 455 28.6
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 4.6e-32 143.3 445 29.0
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-30 137.5 447 27.7
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 2.5e-30 137.5 232 39.2
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 5.6e-30 136.3 446 28.3
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 2.8e-29 134.0 449 28.3
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 6.8e-28 129.4 289 31.1
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.1e-25 122.1 200 40.0
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 9.2e-25 119.0 172 41.3
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 7.3e-22 109.4 328 29.6
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.2e-21 108.6 332 24.7
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 2.1e-21 107.8 241 35.7
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 2.3e-20 104.4 447 26.2
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 5.8e-19 99.8 254 32.3
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 8.4e-18 95.9 404 24.3
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.1e-17 95.5 339 23.6
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 1.9e-17 94.7 148 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 5.4e-17 93.2 320 30.3
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.6e-16 90.1 208 29.3
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 1.0e-15 89.0 180 38.3
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 3.0e-15 87.4 182 31.9
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.9e-15 87.0 272 25.7
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 2.5e-14 84.3 226 31.9
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.6e-14 83.2 220 28.2
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 7.3e-14 82.8 406 25.4
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 9.6e-14 82.4 336 25.0
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 4.0e-12 77.0 328 24.1
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.0e-12 77.0 135 31.1
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.4e-11 73.9 143 30.1
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.9e-10 70.9 273 24.5
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.4e-09 68.6 293 23.9


User provided reference genes

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