Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 8.6e-111 403.7 204 100.0
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 6.2e-101 370.9 215 89.3
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.7e-95 352.8 206 89.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 7.8e-80 300.8 202 75.7
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.0e-79 300.4 202 75.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 202 75.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.7e-79 299.7 211 74.4
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.3e-79 299.3 202 75.2
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 5.1e-79 298.1 204 74.0
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 8.6e-79 297.4 201 75.1
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.1e-78 297.0 205 73.2
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.9e-78 296.2 205 74.6
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.5e-78 295.8 208 71.6
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 7.3e-78 294.3 206 73.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 7.3e-78 294.3 202 74.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.3e-78 294.3 203 73.4
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 9.6e-78 293.9 206 73.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.2e-77 293.5 202 75.2
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.6e-77 293.1 202 74.8
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.1e-77 292.7 205 72.7
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.1e-77 292.7 210 70.0
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.1e-77 292.7 202 74.3
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.1e-77 292.7 202 73.3
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.8e-77 292.4 202 72.8
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 2.8e-77 292.4 202 71.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.8e-77 292.4 205 75.6
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.6e-77 292.0 203 73.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.6e-77 292.0 202 73.3
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.7e-77 291.6 202 73.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 4.7e-77 291.6 202 73.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 4.7e-77 291.6 202 73.8
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.2e-77 291.2 202 72.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.2e-77 291.2 210 70.5
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 8.1e-77 290.8 202 74.8
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.1e-76 290.4 203 73.9
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-76 290.4 202 72.3
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-76 290.4 202 74.8
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.4e-76 290.0 202 73.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.4e-76 290.0 202 73.8
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.8e-76 289.7 202 72.8
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.4e-76 289.3 204 73.0
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.4e-76 289.3 207 71.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.4e-76 289.3 205 73.2
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 3.1e-76 288.9 202 75.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 4.0e-76 288.5 202 73.8
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 5.2e-76 288.1 202 71.3
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 6.8e-76 287.7 206 72.3
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 6.8e-76 287.7 202 73.8
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.9e-76 287.3 202 72.3
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.2e-75 287.0 206 71.8
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-75 287.0 202 72.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-75 287.0 208 70.2
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.2e-75 287.0 202 73.8
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.5e-75 286.6 204 72.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.5e-75 286.6 204 72.1
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.5e-75 286.6 206 71.4
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-75 286.6 207 70.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-75 286.6 207 70.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 2.0e-75 286.2 205 72.7
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 2.0e-75 286.2 200 71.0
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.0e-75 286.2 205 73.2
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.0e-75 286.2 206 70.4
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.6e-75 285.8 205 72.2
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.6e-75 285.8 203 71.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.6e-75 285.8 205 72.2
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.4e-75 285.4 206 71.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 4.4e-75 285.0 202 71.3
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 4.4e-75 285.0 202 71.8
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.8e-75 284.6 208 68.8
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 7.6e-75 284.3 202 70.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.3e-74 283.5 202 72.3
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.7e-74 283.1 202 72.8
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.7e-74 283.1 206 70.9
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.2e-74 282.7 202 71.8
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.9e-74 282.3 204 72.1
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.9e-74 282.3 202 70.3
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.9e-74 282.3 202 72.3
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.8e-74 282.0 202 72.3
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 3.8e-74 282.0 202 71.3
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 4.9e-74 281.6 207 70.0
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 6.4e-74 281.2 200 71.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 6.4e-74 281.2 208 69.7
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.4e-74 280.8 208 70.7
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.1e-73 280.4 206 70.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.4e-73 280.0 205 69.3
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.4e-73 280.0 203 72.9
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.4e-73 280.0 202 71.8
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.9e-73 279.6 207 72.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 4.2e-73 278.5 206 69.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 4.2e-73 278.5 206 69.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 4.2e-73 278.5 207 69.6
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.1e-73 277.7 202 72.3
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.1e-73 277.7 202 72.3
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.1e-73 277.7 202 70.3
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 9.3e-73 277.3 202 69.3
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.3e-73 277.3 202 70.8
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.2e-72 276.9 206 69.4
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.6e-72 276.6 206 68.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.6e-72 276.6 202 71.8
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.1e-72 276.2 205 70.7
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.1e-72 276.2 204 69.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.7e-72 275.8 225 65.3
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.5e-72 275.4 202 69.8
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 4.6e-72 275.0 206 68.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.6e-72 275.0 202 69.8
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-70 270.4 210 69.5
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.3e-70 268.9 214 68.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.3e-70 268.9 202 70.3
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 5.6e-70 268.1 200 67.5
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.3e-69 266.9 202 69.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.1e-69 266.2 202 69.3
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.8e-69 265.8 218 64.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 3.6e-69 265.4 206 68.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 4.8e-69 265.0 251 58.6
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 6.2e-69 264.6 193 70.5
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-68 263.8 202 67.8
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.4e-68 262.7 202 67.8
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.1e-68 262.3 202 66.8
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.9e-67 257.3 204 64.2
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.3e-66 256.9 205 66.8
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.9e-66 255.8 230 60.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.8e-66 255.4 194 67.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 4.9e-66 255.0 184 71.2
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.4e-66 254.6 187 70.1
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.9e-65 253.1 203 64.0
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 7.1e-65 251.1 189 69.3
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 9.3e-65 250.8 184 70.7
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.0e-64 248.1 208 64.9
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.5e-62 243.4 211 63.5
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.9e-62 243.0 194 62.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.3e-62 242.3 202 63.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 7.4e-62 241.1 197 64.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.6e-61 240.0 183 69.4
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.8e-61 238.4 196 60.7
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.1e-60 237.3 223 59.2
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.4e-60 236.1 191 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 3.1e-60 235.7 188 62.2
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.6e-59 232.6 220 58.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.3e-58 230.3 240 55.0
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.7e-58 229.9 206 58.7
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.5e-54 216.1 202 57.4
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-51 207.2 184 60.3
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.0e-51 206.5 122 86.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 4.2e-49 198.7 207 53.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.2e-48 197.2 118 83.1
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 8.7e-47 191.0 160 63.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 8.5e-42 174.5 99 87.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.9e-40 167.9 98 85.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.0e-39 166.0 99 82.8
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 3.3e-38 162.5 185 50.8
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 1.8e-36 156.8 190 52.1
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.5e-30 137.1 97 72.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-29 133.3 70 94.3
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.7e-29 132.5 104 67.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.9e-28 128.3 105 61.0
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.0e-26 124.4 207 43.0
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.8e-23 113.6 194 38.7
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.1e-22 110.9 199 37.2
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 7.4e-22 108.2 100 63.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 5.3e-20 102.1 98 59.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.6e-19 99.8 92 56.5
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.9e-18 96.3 98 57.1
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.5e-17 94.0 95 53.7
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.7e-14 82.0 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.7e-14 81.3 53 77.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.4e-12 76.6 179 34.1
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.5e-09 67.4 72 54.2
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.5e-09 67.4 87 43.7
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 2.1e-08 63.5 80 46.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 2.1e-08 63.5 81 40.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 4.0e-07 59.3 69 44.9


User provided reference genes

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