Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb118910 Zea mays HOM05D002091 ORTHO05D002140 1.5e-38 162.5 91 100.0
Os01g0238800 Oryza sativa ssp. japonica HOM05D002091 ORTHO05D002140 6.9e-28 127.1 92 80.4
Os01g0754000 Oryza sativa ssp. japonica HOM05D002091 ORTHO05D002140 5.9e-11 70.9 96 56.2
Thecc.02G185200 Theobroma cacao HOM05D002091 ORTHO05D002140 1.4e-09 66.2 93 48.4
AL3G53640 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 7.2e-09 63.9 89 51.7
BcaC06g36751 Brassica carinata HOM05D002091 ORTHO05D002140 3.6e-08 61.6 89 50.6
BolC7t40488H Brassica oleracea HOM05D002091 ORTHO05D002140 3.6e-08 61.6 89 50.6
Thhalv10002135m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 3.6e-08 61.6 89 48.3
A07p00150 Brassica napus HOM05D002091 ORTHO05D002140 4.7e-08 61.2 94 46.8
C07p00400 Brassica napus HOM05D002091 ORTHO05D002140 6.1e-08 60.8 94 46.8
BraA07t27809Z Brassica rapa HOM05D002091 ORTHO05D002140 7.9e-08 60.5 87 50.6
BraA09t41268Z Brassica rapa HOM05D002091 ORTHO05D002140 7.9e-08 60.5 96 46.9
AUR62014863 Chenopodium quinoa HOM05D002091 ORTHO05D002140 7.9e-08 60.5 96 43.8
Migut.B01464 Erythranthe guttata HOM05D002091 ORTHO05D002140 7.9e-08 60.5 93 49.5
Sp3g33830 Schrenkiella parvula HOM05D002091 ORTHO05D002140 1.0e-07 60.1 89 48.3
Aa31LG8G17490 Aethionema arabicum HOM05D002091 ORTHO05D002140 1.4e-07 59.7 91 48.4
Duzib052G0085 Durio zibethinus HOM05D002091 ORTHO05D002140 1.4e-07 59.7 93 45.2
Carub.0003s3507 Capsella rubella HOM05D002091 ORTHO05D002140 1.8e-07 59.3 88 48.9
Lalb_Chr22g0356711 Lupinus albus HOM05D002091 ORTHO05D002140 1.8e-07 59.3 92 48.9
AT2G20585 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 2.3e-07 58.9 89 49.4
MD10G1289900 Malus domestica HOM05D002091 ORTHO05D002140 2.3e-07 58.9 97 46.4
PGR042G3216 Punica granatum HOM05D002091 ORTHO05D002140 2.3e-07 58.9 85 49.4
BcaB03g16855 Brassica carinata HOM05D002091 ORTHO05D002140 3.0e-07 58.5 92 48.9
BolC8t51774H Brassica oleracea HOM05D002091 ORTHO05D002140 3.0e-07 58.5 94 45.7
AUR62031069 Chenopodium quinoa HOM05D002091 ORTHO05D002140 3.0e-07 58.5 96 42.7
Haze_13233 Corylus avellana HOM05D002091 ORTHO05D002140 3.0e-07 58.5 88 43.2
TAR624G0503 Trochodendron aralioides HOM05D002091 ORTHO05D002140 3.0e-07 58.5 86 47.7
COL.COLO4_18048 Corchorus olitorius HOM05D002091 ORTHO05D002140 3.9e-07 58.2 86 46.5
MD05G1310800 Malus domestica HOM05D002091 ORTHO05D002140 5.1e-07 57.8 90 46.7
TAR626G1951 Trochodendron aralioides HOM05D002091 ORTHO05D002140 5.1e-07 57.8 86 48.8
CANSAT64G3013 Cannabis sativa HOM05D002091 ORTHO05D002140 6.7e-07 57.4 86 50.0
Prupe.3G134600 Prunus persica HOM05D002091 ORTHO05D002140 6.7e-07 57.4 86 50.0
Sc17g0005970 Simmondsia chinensis HOM05D002091 ORTHO05D002140 6.7e-07 57.4 90 45.6
TAR624G0411 Trochodendron aralioides HOM05D002091 ORTHO05D002140 6.7e-07 57.4 84 46.4
QL08p040000 Quercus lobata HOM05D002091 ORTHO05D002140 8.8e-07 57.0 88 47.7
BolC3t19767H Brassica oleracea HOM05D002091 ORTHO05D002140 1.1e-06 56.6 100 44.0
RcHm_v2.0_Chr7g0223571 Rosa chinensis HOM05D002091 ORTHO05D002140 1.1e-06 56.6 89 47.2
Thecc.06G181700 Theobroma cacao HOM05D002091 ORTHO05D002140 1.1e-06 56.6 92 45.7
BcaB08g34918 Brassica carinata HOM05D002091 ORTHO05D002140 1.5e-06 56.2 94 40.4
Gorai.005G199700 Gossypium raimondii HOM05D002091 ORTHO05D002140 1.5e-06 56.2 93 46.2
Lalb_Chr16g0383981 Lupinus albus HOM05D002091 ORTHO05D002140 1.5e-06 56.2 96 43.8
Glyma.13G294600 Glycine max HOM05D002091 ORTHO05D002140 2.0e-06 55.8 85 49.4
Glyma.15G077400 Glycine max HOM05D002091 ORTHO05D002140 2.0e-06 55.8 96 43.8
Gohir.A10G027700 Gossypium hirsutum HOM05D002091 ORTHO05D002140 2.0e-06 55.8 97 43.3
Gohir.D02G177900 Gossypium hirsutum HOM05D002091 ORTHO05D002140 2.0e-06 55.8 93 46.2
Medtr4g078770 Medicago truncatula HOM05D002091 ORTHO05D002140 2.0e-06 55.8 87 46.0
Nitab4.5_0006815g0050 Nicotiana tabacum HOM05D002091 ORTHO05D002140 2.0e-06 55.8 85 49.4
Ca_01484_v3 Cicer arietinum L. HOM05D002091 ORTHO05D002140 2.6e-06 55.5 84 48.8
Duzib192G0619 Durio zibethinus HOM05D002091 ORTHO05D002140 2.6e-06 55.5 90 44.4
Glyma.13G236300 Glycine max HOM05D002091 ORTHO05D002140 2.6e-06 55.5 96 42.7
Gorai.011G029900 Gossypium raimondii HOM05D002091 ORTHO05D002140 2.6e-06 55.5 92 42.4
Potri.007G137500 Populus trichocarpa HOM05D002091 ORTHO05D002140 2.6e-06 55.5 84 46.4
Prupe.4G051800 Prunus persica HOM05D002091 ORTHO05D002140 2.6e-06 55.5 96 43.8
Sopen07g027640 Solanum pennellii HOM05D002091 ORTHO05D002140 2.6e-06 55.5 93 44.1
BraA08t34511Z Brassica rapa HOM05D002091 ORTHO05D002140 3.3e-06 55.1 100 44.0
Carub.0004s1554 Capsella rubella HOM05D002091 ORTHO05D002140 3.3e-06 55.1 90 45.6
Dinv10163 Davidia involucrata HOM05D002091 ORTHO05D002140 3.3e-06 55.1 93 44.1
Eucgr.K01049 Eucalyptus grandis HOM05D002091 ORTHO05D002140 3.3e-06 55.1 93 46.2
Lalb_Chr09g0327831 Lupinus albus HOM05D002091 ORTHO05D002140 3.3e-06 55.1 85 44.7
Sabra07G0110400 Salix brachista HOM05D002091 ORTHO05D002140 3.3e-06 55.1 84 46.4
PGSC0003DMG400009394 Solanum tuberosum HOM05D002091 ORTHO05D002140 3.3e-06 55.1 93 44.1
arahy.Tifrunner.gnm1.ann1.1N9QNC Arachis hypogaea HOM05D002091 ORTHO05D002140 4.4e-06 54.7 84 44.0
BcaC01g00046 Brassica carinata HOM05D002091 ORTHO05D002140 4.4e-06 54.7 93 44.1
BcaC07g41205 Brassica carinata HOM05D002091 ORTHO05D002140 4.4e-06 54.7 84 44.0
C03p75100 Brassica napus HOM05D002091 ORTHO05D002140 4.4e-06 54.7 93 44.1
CARHR111160 Cardamine hirsuta HOM05D002091 ORTHO05D002140 4.4e-06 54.7 89 49.4
Ciclev10017075m.g Citrus clementina HOM05D002091 ORTHO05D002140 4.4e-06 54.7 98 42.9
FAN21G3975 Fragaria x ananassa HOM05D000422 ORTHO05D011804 4.4e-06 54.7 95 43.2
HanXRQChr02g0052161 Helianthus annuus HOM05D002091 ORTHO05D002140 4.4e-06 54.7 84 46.4
BcaB03g12107 Brassica carinata HOM05D002091 ORTHO05D002140 5.7e-06 54.3 94 44.7
Carub.0001s2687 Capsella rubella HOM05D002091 ORTHO05D002140 5.7e-06 54.3 100 45.0
CsaV3_5G038050 Cucumis sativus L. HOM05D002091 ORTHO05D002140 5.7e-06 54.3 93 43.0
Glyma.12G206300 Glycine max HOM05D002091 ORTHO05D002140 5.7e-06 54.3 87 47.1
Potri.004G048100 Populus trichocarpa HOM05D002091 ORTHO05D002140 5.7e-06 54.3 87 41.4
Hund23804 Selenicereus undatus HOM05D002091 ORTHO05D002140 5.7e-06 54.3 42 61.9
arahy.Tifrunner.gnm1.ann1.JHM90T Arachis hypogaea HOM05D002091 ORTHO05D002140 7.4e-06 53.9 87 48.3
C08p42140 Brassica napus HOM05D002091 ORTHO05D002140 7.4e-06 53.9 86 45.3
HanXRQChr13g0399871 Helianthus annuus HOM05D002091 ORTHO05D002140 7.4e-06 53.9 84 45.2
Sc05g0007470 Simmondsia chinensis HOM05D002091 ORTHO05D002140 7.4e-06 53.9 84 48.8
Dinv06863 Davidia involucrata HOM05D002091 ORTHO05D002140 9.7e-06 53.5 92 42.4
FvH4_3g02420 Fragaria vesca HOM05D002091 ORTHO05D002140 9.7e-06 53.5 95 42.1
Gohir.D10G028100 Gossypium hirsutum HOM05D002091 ORTHO05D002140 9.7e-06 53.5 90 43.3
Lsat_1_v5_gn_6_31181 Lactuca sativa HOM05D002091 ORTHO05D002140 9.7e-06 53.5 84 45.2
Lj3g0025541 Lotus japonicus HOM05D002091 ORTHO05D002140 9.7e-06 53.5 85 47.1
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 9.7e-06 53.5 88 42.0


User provided reference genes

Program Settings