Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 3.0e-232 808.1 403 100.0
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 1.2e-137 493.8 361 69.0
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 4.3e-82 309.3 356 46.1
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 3.6e-76 289.7 357 45.4
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 4.7e-76 289.3 362 45.3
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 4.7e-76 289.3 358 45.8
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 2.3e-75 287.0 357 45.1
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 9.7e-74 281.6 360 45.3
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 1.3e-73 281.2 358 45.5
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 4.8e-73 279.3 357 43.7
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 4.8e-73 279.3 357 44.8
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 6.3e-73 278.9 358 43.9
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 8.2e-73 278.5 346 45.1
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 1.4e-72 277.7 356 41.6
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 3.1e-72 276.6 356 44.7
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 9.1e-72 275.0 345 44.6
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 9.1e-72 275.0 357 43.4
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 1.2e-71 274.6 343 44.0
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 2.6e-71 273.5 347 45.0
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 1.3e-70 271.2 361 43.8
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 1.7e-70 270.8 356 41.9
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.7e-70 270.8 356 43.8
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 1.4e-69 267.7 360 43.1
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.9e-69 267.3 357 43.1
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.9e-69 267.3 361 42.9
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 1.6e-68 264.2 353 43.6
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 2.7e-68 263.5 346 42.8
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 2.7e-68 263.5 356 41.0
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 6.1e-68 262.3 360 43.6
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 1.4e-67 261.2 349 44.1
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 1.4e-67 261.2 330 44.5
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 3.0e-67 260.0 350 42.0
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 3.0e-67 260.0 350 42.0
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 3.9e-67 259.6 344 40.4
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 3.9e-67 259.6 359 41.8
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 5.2e-67 259.2 339 44.5
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 8.8e-67 258.5 355 42.3
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 1.1e-66 258.1 325 43.7
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 2.6e-66 256.9 356 42.1
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 3.3e-66 256.5 397 39.8
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 3.3e-66 256.5 357 40.9
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 4.8e-65 252.7 323 44.6
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 8.2e-65 251.9 368 40.2
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 8.2e-65 251.9 358 40.8
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 3.1e-64 250.0 351 44.2
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 4.1e-64 249.6 360 41.1
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 7.0e-64 248.8 339 43.1
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 1.2e-63 248.1 339 42.8
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 1.6e-63 247.7 361 39.9
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 2.0e-63 247.3 389 39.1
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 2.6e-63 246.9 369 40.4
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 3.5e-63 246.5 346 41.0
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 5.9e-63 245.7 354 42.4
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 7.7e-63 245.4 417 37.6
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 1.3e-62 244.6 358 38.8
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 1.7e-62 244.2 355 39.7
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 2.2e-62 243.8 354 42.1
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 2.9e-62 243.4 345 41.2
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 3.8e-62 243.0 356 39.9
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 3.8e-62 243.0 356 39.9
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 3.8e-62 243.0 352 40.3
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 5.0e-62 242.7 350 40.9
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 6.5e-62 242.3 347 40.9
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 1.1e-61 241.5 356 40.4
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 1.5e-61 241.1 354 41.8
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 1.9e-61 240.7 358 40.2
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 2.5e-61 240.4 339 38.9
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 3.2e-61 240.0 323 41.5
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 5.5e-61 239.2 361 39.1
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 5.5e-61 239.2 358 38.5
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 5.5e-61 239.2 358 38.5
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 5.5e-61 239.2 349 40.4
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 7.2e-61 238.8 344 41.0
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 7.2e-61 238.8 360 39.4
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 9.4e-61 238.4 349 39.5
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 1.2e-60 238.0 349 39.8
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 1.2e-60 238.0 351 39.9
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 1.6e-60 237.7 355 40.3
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 3.6e-60 236.5 346 39.6
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 3.6e-60 236.5 355 39.2
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 4.7e-60 236.1 355 40.3
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 6.1e-60 235.7 361 38.8
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 6.1e-60 235.7 364 39.0
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 5.7e-58 229.2 399 35.8
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 7.5e-58 228.8 337 39.2
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 2.2e-57 227.3 344 41.0
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 3.8e-54 216.5 418 34.9
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 5.0e-54 216.1 344 39.0
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 1.9e-53 214.2 315 40.6
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 2.5e-53 213.8 357 36.7
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 9.4e-53 211.8 304 40.5
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 3.6e-52 209.9 371 35.0
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 2.3e-51 207.2 210 51.9
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 1.2e-50 204.9 345 35.9
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 1.8e-43 181.0 271 39.5
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 2.2e-41 174.1 256 37.9
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 1.3e-38 164.9 358 31.8
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 9.8e-34 148.7 184 44.0
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 1.3e-33 148.3 232 37.5
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 2.0e-31 141.0 346 30.1
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 2.7e-31 140.6 349 29.5
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 6.6e-30 136.0 182 41.2
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.1e-29 135.2 358 28.5
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 1.6e-28 131.3 281 31.7
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 1.2e-26 125.2 326 30.7
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 3.4e-26 123.6 331 28.4
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 2.4e-24 117.5 327 27.8
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 1.4e-19 101.7 363 27.0
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 4.0e-19 100.1 123 40.7
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 4.9e-17 93.2 108 48.1
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 1.2e-15 88.6 317 25.9
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 1.0e-14 85.5 120 39.2
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 4.3e-13 80.1 89 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 6.2e-12 76.3 302 25.2
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 9.2e-08 62.4 91 31.9
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 7.8e-07 59.3 171 30.4


User provided reference genes

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