Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb118600 Zea mays HOM05D003210 ORTHO05D000001 3.7e-191 672.9 988 100.0
Zm00001eb164240 Zea mays HOM05D003210 ORTHO05D000001 2.6e-128 464.2 429 99.5
Os06g0690900 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 1.3e-111 408.7 990 83.9
Zm00001eb118490 Zea mays HOM05D003210 ORTHO05D000001 5.3e-81 307.0 160 99.4
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 6.5e-31 140.6 183 41.0
Zm00001eb118500 Zea mays HOM05D017046 ORTHO05D020998 5.2e-28 131.0 64 100.0
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 2.2e-26 125.6 208 36.5
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 4.9e-26 124.4 197 37.1
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.4e-25 122.9 183 37.2
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 5.4e-25 120.9 195 33.8
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 5.9e-24 117.5 201 31.3
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.0e-23 116.7 181 34.8
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.3e-23 116.3 181 36.5
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 1.7e-23 115.9 196 33.7
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 3.8e-23 114.8 203 34.5
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 1.5e-22 112.8 186 33.3
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 2.5e-22 112.1 184 33.2
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 3.3e-22 111.7 183 35.5
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.3e-22 111.7 192 32.8
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.3e-22 111.7 192 31.8
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 4.3e-22 111.3 195 32.8
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 9.5e-22 110.2 183 33.9
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 2.8e-21 108.6 194 33.0
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 2.8e-21 108.6 195 32.3
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.6e-21 108.2 182 33.0
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 3.6e-21 108.2 184 34.8
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 4.7e-21 107.8 182 32.4
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 6.1e-21 107.5 181 33.7
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 8.0e-21 107.1 200 34.5
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 8.0e-21 107.1 224 33.5
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 1.0e-20 106.7 200 34.5
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.0e-20 106.7 190 32.1
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 1.4e-20 106.3 198 35.4
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 3.0e-20 105.1 181 33.1
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 3.4e-19 101.7 173 35.3
HPP92_001177 Vanilla planifolia HOM05D003210 ORTHO05D000001 4.4e-19 101.3 170 33.5
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.8e-19 100.9 206 33.0
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 7.5e-19 100.5 173 35.3
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 7.5e-19 100.5 183 35.5
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 7.5e-19 100.5 196 32.1
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 9.8e-19 100.1 174 32.8
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 9.8e-19 100.1 192 30.7
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.7e-18 99.4 191 31.9
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 2.2e-18 99.0 173 34.7
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 2.2e-18 99.0 173 34.7
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 2.2e-18 99.0 173 34.7
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 4.9e-18 97.8 180 31.7
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 6.4e-18 97.4 185 29.7
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 6.4e-18 97.4 175 31.4
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-17 95.9 173 34.7
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 1.8e-17 95.9 183 30.6
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 2.4e-17 95.5 197 31.5
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 3.2e-17 95.1 162 34.0
HPP92_017252 Vanilla planifolia HOM05D003210 ORTHO05D000001 3.2e-17 95.1 195 32.3
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 4.1e-17 94.7 174 31.6
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 5.4e-17 94.4 200 32.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 5.4e-17 94.4 198 32.8
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 9.2e-17 93.6 174 32.2
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 1.2e-16 93.2 181 30.9
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 1.6e-16 92.8 182 30.2
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 2.0e-16 92.4 198 28.8
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 2.0e-16 92.4 175 31.4
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 2.7e-16 92.0 178 32.6
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.5e-16 91.7 159 34.6
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 4.6e-16 91.3 178 32.0
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 6.0e-16 90.9 185 31.9
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 6.0e-16 90.9 185 31.9
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 6.0e-16 90.9 186 29.6
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 7.8e-16 90.5 190 28.9
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 7.8e-16 90.5 159 34.0
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 7.8e-16 90.5 205 28.3
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 1.0e-15 90.1 206 29.1
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 3.0e-15 88.6 139 35.3
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 3.9e-15 88.2 190 31.6
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 3.9e-15 88.2 153 33.3
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 3.9e-15 88.2 168 29.8
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 3.9e-15 88.2 172 30.2
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 1.9e-14 85.9 199 29.1
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 2.5e-14 85.5 183 28.4
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 3.3e-14 85.1 183 25.7
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 9.5e-14 83.6 186 29.0
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 9.5e-14 83.6 199 27.1
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 2.8e-13 82.0 205 29.8
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 2.8e-13 82.0 205 29.8
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 4.7e-13 81.3 193 30.1
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 4.7e-13 81.3 203 28.1
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 2.3e-12 79.0 174 30.5
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.3e-12 79.0 159 31.4
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.2e-12 77.8 159 31.4
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 8.9e-12 77.0 197 28.4
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.2e-11 76.6 192 28.1
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 1.2e-11 76.6 159 30.8
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 1.5e-11 76.3 176 31.2
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 1.5e-11 76.3 159 30.2
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 4.4e-11 74.7 167 29.9
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 5.8e-11 74.3 179 30.2
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 7.5e-11 73.9 186 30.1
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 9.8e-11 73.6 157 29.3
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 2.2e-10 72.4 219 27.9
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 6.4e-10 70.9 166 28.9
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 1.1e-09 70.1 167 28.1
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 1.1e-09 70.1 185 28.1
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 2.4e-09 68.9 194 24.2
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 2.4e-09 68.9 169 29.0
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 2.4e-09 68.9 158 25.3
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 3.2e-09 68.6 176 24.4
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 9.2e-09 67.0 192 24.5
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.2e-08 66.6 159 27.7
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 2.1e-08 65.9 182 25.8
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 4.6e-08 64.7 191 25.7
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 1.0e-07 63.5 158 24.7
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 1.0e-07 63.5 195 28.2
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 1.0e-07 63.5 179 26.8
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 1.3e-07 63.2 179 26.8
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 3.9e-07 61.6 196 24.0
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 6.6e-07 60.8 135 27.4
QL08p010035 Quercus lobata HOM05D007291 ORTHO05D009038 6.6e-07 60.8 172 26.2
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 8.6e-07 60.5 169 25.4
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 8.6e-07 60.5 161 28.0
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.5e-06 59.7 171 26.9
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 1.5e-06 59.7 198 25.3
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 1.5e-06 59.7 157 28.0
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.5e-06 58.9 158 27.2
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 4.3e-06 58.2 190 24.2
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 4.3e-06 58.2 209 26.3
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 4.3e-06 58.2 193 22.8
BraA01t00705Z Brassica rapa HOM05D015591 ORTHO05D000001 7.3e-06 57.4 199 23.1
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 7.3e-06 57.4 141 27.7
CDE04G2722 Ceratophyllum demersum HOM05D008470 ORTHO05D010644 7.3e-06 57.4 176 28.4
Os06g0184866 Oryza sativa ssp. japonica HOM05D007486 ORTHO05D003673 7.3e-06 57.4 174 31.6
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 7.3e-06 57.4 177 26.0
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 7.3e-06 57.4 157 28.7
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 9.5e-06 57.0 212 24.5


User provided reference genes

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