Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1687.5 842 100.0
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1370.1 843 79.8
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1361.7 843 79.4
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1360.1 843 79.7
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1357.0 843 79.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 843 78.3
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1325.8 843 77.5
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1325.8 842 77.8
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1325.5 843 77.3
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 842 77.3
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1322.4 843 77.2
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 843 76.7
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 843 76.7
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 843 75.9
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 843 77.1
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 834 77.0
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 843 75.4
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1307.7 843 75.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 843 76.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1306.6 843 76.5
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 845 77.0
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1303.9 873 74.6
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1303.9 843 76.3
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1303.1 843 77.1
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1302.3 843 75.8
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 843 76.3
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 845 76.3
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 843 75.7
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1297.0 843 76.5
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1296.2 831 76.7
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 843 76.0
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 843 76.0
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1294.6 863 74.9
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1293.9 843 75.1
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 843 75.6
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1292.3 843 75.3
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 843 75.9
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1283.5 843 74.7
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 843 74.7
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 844 75.2
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1281.5 845 76.1
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1281.2 919 70.7
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1280.8 843 74.7
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1280.8 850 75.2
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1280.4 844 74.5
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1279.6 843 74.4
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1279.2 875 73.7
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1279.2 846 75.2
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1278.5 844 75.1
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 844 74.9
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1277.7 843 74.7
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1277.3 845 74.7
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 843 74.7
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 843 75.2
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 843 74.5
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1274.6 846 75.1
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1273.8 843 74.5
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1273.1 843 74.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1271.9 849 75.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1271.1 843 74.1
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1270.0 843 74.0
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1269.6 850 74.1
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1268.8 850 74.1
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1267.3 843 74.7
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1265.8 786 78.9
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1265.4 850 74.0
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1265.4 844 74.1
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1260.7 971 66.5
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1258.8 843 73.8
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1258.4 916 69.9
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1254.2 844 74.1
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1251.1 846 73.9
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1250.0 846 74.0
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1248.4 863 72.5
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1248.4 845 73.5
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1245.3 842 73.6
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1244.6 872 72.6
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1242.6 909 69.9
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1230.3 916 68.8
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1229.5 769 77.6
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1226.1 856 71.8
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1223.8 843 73.4
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1222.6 843 72.5
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1214.5 861 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1210.7 844 71.8
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1206.4 830 72.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1206.4 831 72.6
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1189.1 846 71.2
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1186.4 771 75.5
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1186.4 848 70.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1184.9 770 74.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1179.5 756 76.3
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1164.4 781 74.0
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 846 70.4
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1161.0 843 69.4
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1139.8 844 69.3
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1136.3 793 71.0
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1133.2 856 66.4
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1130.5 842 68.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1107.4 857 66.2
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1102.4 759 71.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 0.0e+00 1097.0 843 66.0
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1075.1 843 65.4
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 5.7e-310 1067.4 704 74.7
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 3.9e-303 1044.6 702 73.1
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.2e-291 1006.5 659 75.6
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 6.6e-266 921.0 850 59.2
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 3.1e-239 832.4 642 66.5
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 4.0e-239 832.0 542 74.5
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.5e-206 723.8 513 68.0
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 3.0e-202 709.5 423 82.5
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 7.3e-156 555.4 334 82.3
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 3.5e-118 430.3 309 73.8
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 5.8e-113 412.9 259 80.3
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.1e-110 404.4 307 63.2
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 4.5e-97 360.1 285 62.5
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 9.7e-92 342.4 194 85.1
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 5.1e-85 320.1 393 48.6
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 6.5e-80 303.1 265 59.2
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 2.8e-67 261.2 280 52.5
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.1e-63 249.2 182 70.3
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.3e-53 214.9 143 74.8
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.8e-53 213.4 140 75.0
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.3e-45 188.3 94 97.9
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 3.4e-44 184.5 117 76.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 7.3e-31 140.2 83 79.5
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 4.7e-30 137.5 82 84.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 8.1e-30 136.7 133 53.4
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 9.9e-28 129.8 68 92.6
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.1e-26 126.3 84 72.6
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.6e-25 122.5 76 76.3
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 8.9e-21 106.7 74 74.3
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 8.9e-21 106.7 85 58.8
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 5.4e-18 97.4 67 71.6
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 9.0e-13 80.1 105 50.5
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.1e-09 68.9 60 66.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 2.5e-07 62.0 49 65.3
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 4.8e-06 57.8 41 65.9


User provided reference genes

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