Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.0e-251 872.1 474 100.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.6e-152 542.3 477 61.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.8e-151 537.7 484 63.8
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 3.4e-150 535.8 484 63.4
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 7.0e-148 528.1 482 61.4
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.2e-147 527.3 482 60.8
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.0e-147 526.6 480 61.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 3.5e-147 525.8 471 61.4
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.9e-145 520.0 471 60.9
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.9e-145 520.0 471 60.9
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 3.2e-145 519.2 481 61.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 7.2e-145 518.1 470 60.2
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.2e-144 517.3 481 60.5
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.2e-144 517.3 465 61.9
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.6e-144 516.9 483 60.7
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 2.1e-144 516.5 481 60.9
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 3.6e-144 515.8 482 60.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.0e-143 514.2 481 60.9
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.0e-143 512.7 482 59.3
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 5.2e-143 511.9 482 59.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 8.8e-143 511.1 474 60.1
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.2e-142 510.8 474 61.4
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.5e-142 510.4 477 59.1
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.6e-142 509.6 481 59.3
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.6e-142 509.6 474 59.9
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.4e-142 508.8 475 61.7
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 4.4e-142 508.8 482 59.3
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.4e-142 508.8 483 60.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 5.7e-142 508.4 482 60.0
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 5.7e-142 508.4 474 59.9
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 7.5e-142 508.1 468 61.5
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 7.5e-142 508.1 478 59.8
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 9.8e-142 507.7 481 59.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 6.3e-141 505.0 483 57.6
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.3e-141 505.0 483 60.0
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.4e-140 503.1 463 60.3
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 3.1e-140 502.7 472 59.7
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 7.0e-140 501.5 463 60.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 9.2e-140 501.1 463 60.3
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 9.2e-140 501.1 474 59.3
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.6e-139 500.4 483 59.6
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.6e-139 500.4 462 60.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.6e-139 500.4 483 59.2
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.7e-139 499.6 471 59.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.7e-139 499.6 485 59.2
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.5e-139 499.2 471 59.7
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.9e-139 498.4 482 57.9
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.0e-138 495.4 501 57.3
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.9e-137 493.4 481 57.8
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.3e-137 492.7 483 59.0
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 4.3e-137 492.3 483 58.6
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 5.6e-137 491.9 484 57.9
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.2e-136 490.7 483 58.0
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.2e-136 490.7 474 58.4
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.2e-136 490.7 472 59.1
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 4.7e-136 488.8 484 58.5
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 8.0e-136 488.0 496 56.9
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.4e-135 487.3 470 58.3
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.8e-135 486.9 511 55.6
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-135 486.9 483 57.8
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.3e-135 486.5 486 57.6
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.2e-135 485.3 478 58.4
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 6.8e-135 485.0 463 58.1
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.9e-135 484.6 483 58.0
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.5e-134 483.8 486 57.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.0e-134 483.4 487 57.9
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.6e-134 483.0 423 62.9
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 2.6e-134 483.0 463 58.7
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.6e-134 483.0 470 57.7
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 3.4e-134 482.6 483 58.2
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 5.7e-134 481.9 470 57.9
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 9.8e-134 481.1 486 57.8
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.3e-133 480.7 486 58.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.7e-133 480.3 470 58.7
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.7e-133 480.3 487 57.9
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-133 479.9 490 56.7
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 2.2e-133 479.9 471 57.5
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 4.9e-133 478.8 476 56.7
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.8e-132 476.9 487 57.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.8e-132 476.9 472 57.6
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 3.2e-132 476.1 486 57.6
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 4.1e-132 475.7 484 57.0
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 9.2e-132 474.6 492 56.5
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 9.2e-132 474.6 482 57.5
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-131 473.8 490 56.9
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.6e-131 473.8 481 57.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 3.5e-131 472.6 464 57.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 4.6e-131 472.2 491 55.8
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-130 470.3 460 57.8
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.7e-130 470.3 485 56.3
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 9.5e-129 464.5 469 56.7
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 4.7e-128 462.2 484 56.4
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 4.7e-128 462.2 485 55.9
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 6.2e-128 461.8 486 56.6
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.1e-127 461.1 484 56.4
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.8e-126 455.3 482 55.4
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 5.8e-126 455.3 482 55.8
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.3e-125 454.1 471 55.8
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-125 454.1 500 55.0
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 8.3e-125 451.4 486 56.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.0e-122 444.5 369 63.4
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.8e-120 436.4 355 65.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.2e-118 431.0 420 58.3
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.7e-117 427.2 390 65.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.6e-114 414.8 503 51.1
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 3.1e-111 406.4 425 56.0
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 7.6e-110 401.7 466 50.0
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.1e-108 397.9 510 48.6
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.2e-107 394.4 480 51.9
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.8e-107 391.7 483 50.7
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.3e-106 390.2 386 53.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.6e-97 358.2 438 52.3
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.3e-96 357.8 467 48.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 6.2e-96 355.5 483 47.6
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.9e-93 346.7 382 53.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 4.5e-86 322.8 439 45.3
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.5e-81 307.8 340 52.1
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.4e-79 301.2 323 51.1
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.4e-79 300.4 356 54.2
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 2.0e-78 297.4 488 45.9
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.2e-75 288.1 195 70.3
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 7.4e-73 278.9 379 50.9
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 7.4e-73 278.9 379 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.4e-71 273.9 435 41.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.4e-68 264.6 255 60.8
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.9e-63 245.7 218 61.0
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-60 238.4 219 61.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.1e-57 228.4 421 38.7
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.0e-53 215.3 406 38.2
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.4e-50 204.9 400 33.2
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-49 201.1 202 57.9
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.7e-45 188.0 404 35.6
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.1e-44 185.3 276 43.8
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.0e-43 179.1 107 83.2
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-37 159.5 164 53.7
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.0e-26 124.0 97 58.8
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.2e-24 117.9 88 63.6
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.1e-23 115.5 92 57.6
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.3e-21 108.6 168 48.2
Zm00001eb299700 Zea mays HOM05D004710 ORTHO05D445020 4.3e-20 103.6 120 60.0
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 8.9e-18 95.9 122 45.9
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 5.8e-17 93.2 288 36.1
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 4.9e-16 90.1 184 35.9
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 6.4e-16 89.7 134 46.3
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.0e-10 70.5 62 62.9
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.0e-10 70.5 62 62.9
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 3.4e-09 67.4 71 56.3
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.7e-08 63.9 62 58.1
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.2e-07 60.8 124 40.3


User provided reference genes

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