Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 2.0e-86 322.4 164 100.0
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 1.8e-55 219.5 132 91.7
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 3.1e-55 218.8 133 91.0
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 5.6e-44 181.4 122 85.2
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.0e-21 107.5 92 68.5
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 4.0e-18 95.5 66 84.8
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 1.0e-13 80.9 131 48.9
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.0e-10 67.8 109 41.3
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 4.4e-09 65.5 112 43.8
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 5.8e-09 65.1 128 41.4
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 1.7e-08 63.5 125 42.4
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 2.2e-08 63.2 110 40.9
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 2.2e-08 63.2 84 45.2
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 2.9e-08 62.8 103 42.7
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 2.9e-08 62.8 103 43.7
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.8e-08 62.4 109 38.5
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 3.8e-08 62.4 90 44.4
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 3.8e-08 62.4 126 42.1
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 3.8e-08 62.4 97 39.2
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 3.8e-08 62.4 126 39.7
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 3.8e-08 62.4 120 41.7
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.9e-08 62.0 109 40.4
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 4.9e-08 62.0 109 38.5
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 4.9e-08 62.0 109 38.5
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 4.9e-08 62.0 84 46.4
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 4.9e-08 62.0 111 41.4
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 6.4e-08 61.6 90 45.6
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 1.1e-07 60.8 111 41.4
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 1.1e-07 60.8 92 43.5
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.4e-07 60.5 109 39.4
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.4e-07 60.5 89 44.9
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 1.4e-07 60.5 130 36.9
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.9e-07 60.1 111 40.5
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.9e-07 60.1 84 42.9
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 1.9e-07 60.1 84 42.9
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 1.9e-07 60.1 145 37.2
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.9e-07 60.1 89 44.9
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 2.4e-07 59.7 89 44.9
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 2.4e-07 59.7 89 44.9
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 2.4e-07 59.7 110 40.9
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 3.2e-07 59.3 87 42.5
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 3.2e-07 59.3 111 39.6
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 3.2e-07 59.3 111 39.6
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.2e-07 59.3 92 43.5
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.2e-07 59.3 92 43.5
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 3.2e-07 59.3 142 34.5
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 3.2e-07 59.3 84 41.7
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 4.2e-07 58.9 114 42.1
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 4.2e-07 58.9 111 42.3
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 5.4e-07 58.5 124 36.3
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 5.4e-07 58.5 127 40.2
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 5.4e-07 58.5 127 40.2
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 5.4e-07 58.5 87 43.7
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 7.1e-07 58.2 89 44.9
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 9.3e-07 57.8 108 38.0
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 9.3e-07 57.8 116 38.8
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 9.3e-07 57.8 89 41.6
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 9.3e-07 57.8 88 39.8
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 1.2e-06 57.4 99 37.4
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 1.2e-06 57.4 88 42.0
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.2e-06 57.4 108 38.0
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.2e-06 57.4 108 38.0
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 1.2e-06 57.4 85 43.5
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 1.2e-06 57.4 104 40.4
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 1.2e-06 57.4 84 40.5
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 1.2e-06 57.4 84 40.5
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.6e-06 57.0 138 39.1
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 2.1e-06 56.6 100 43.0
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 2.1e-06 56.6 83 41.0
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 2.7e-06 56.2 86 44.2
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 2.7e-06 56.2 86 44.2
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 2.7e-06 56.2 83 41.0
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.7e-06 56.2 92 42.4
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 2.7e-06 56.2 139 33.1
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 2.7e-06 56.2 100 41.0
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 4.6e-06 55.5 88 42.0
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 4.6e-06 55.5 112 40.2
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 4.6e-06 55.5 84 39.3
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 6.0e-06 55.1 101 41.6
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 7.8e-06 54.7 131 34.4
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 7.8e-06 54.7 84 38.1
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.8e-06 54.7 112 40.2


User provided reference genes

Program Settings