Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 6.8e-125 450.7 226 100.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.4e-24 117.5 191 39.8
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.2e-22 110.2 192 38.5
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 4.5e-20 102.4 185 40.5
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.7e-20 101.7 189 39.7
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 5.5e-18 95.5 184 36.4
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 9.4e-18 94.7 191 35.6
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.6e-17 94.0 183 38.3
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.7e-17 93.2 187 34.8
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 3.6e-17 92.8 178 36.0
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.7e-17 92.4 183 36.6
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 6.1e-17 92.0 184 34.2
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.1e-17 92.0 178 36.5
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 6.1e-17 92.0 187 34.8
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.0e-17 91.7 181 36.5
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.4e-16 90.9 187 32.1
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.3e-16 90.1 181 34.3
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.0e-16 89.7 187 34.2
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 5.2e-16 89.0 98 43.9
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.6e-15 86.7 183 36.1
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 4.4e-15 85.9 187 35.3
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 4.4e-15 85.9 184 33.7
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.4e-15 85.9 84 47.6
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 5.7e-15 85.5 186 39.2
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 5.7e-15 85.5 187 35.8
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 7.5e-15 85.1 184 33.7
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.3e-14 84.3 179 35.2
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.7e-14 84.0 185 33.0
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.7e-14 84.0 185 38.9
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.7e-14 84.0 176 36.4
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 2.8e-14 83.2 184 35.9
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 3.7e-14 82.8 184 34.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 4.8e-14 82.4 87 49.4
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 6.3e-14 82.0 184 34.8
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.1e-13 81.3 186 36.0
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.1e-13 81.3 198 32.3
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.4e-13 80.9 176 35.2
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.8e-13 80.5 91 45.1
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.4e-13 80.1 183 31.7
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.4e-13 80.1 185 35.1
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.1e-13 79.7 180 32.8
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.1e-13 79.3 181 33.1
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 5.4e-13 79.0 183 34.4
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 5.4e-13 79.0 177 39.0
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 7.0e-13 78.6 94 40.4
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 9.1e-13 78.2 195 34.4
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.2e-12 77.8 182 33.0
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 1.2e-12 77.8 83 47.0
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.6e-12 77.4 83 47.0
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 3.5e-12 76.3 173 32.9
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 7.7e-12 75.1 226 30.1
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.7e-12 75.1 80 48.8
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.7e-12 75.1 80 48.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.3e-11 74.3 185 32.4
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.7e-11 73.9 189 32.3
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.7e-11 73.9 185 33.5
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.7e-11 73.9 181 33.7
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.7e-11 73.9 185 29.7
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.2e-11 73.6 176 34.1
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 2.2e-11 73.6 176 34.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 2.2e-11 73.6 85 41.2
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.2e-11 73.6 177 35.0
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-11 73.6 80 47.5
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 3.8e-11 72.8 178 32.6
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 5.0e-11 72.4 174 32.8
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.0e-11 72.4 190 34.7
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 8.5e-11 71.6 176 30.1
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 1.1e-10 71.2 79 45.6
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.1e-10 71.2 179 31.8
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.5e-10 70.9 184 31.5
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.5e-10 70.1 177 30.5
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 2.5e-10 70.1 174 31.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 4.2e-10 69.3 85 41.2
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 5.5e-10 68.9 193 32.1
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 5.5e-10 68.9 175 34.3
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 5.5e-10 68.9 86 41.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 7.2e-10 68.6 84 42.9
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.2e-09 67.8 172 29.7
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.6e-09 67.4 234 29.1
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 2.1e-09 67.0 169 32.0
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 2.7e-09 66.6 180 31.7
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.6e-09 66.2 155 33.5
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 4.7e-09 65.9 174 31.6
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 6.1e-09 65.5 194 32.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.0e-08 64.7 84 41.7
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-08 64.7 84 41.7
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-08 64.7 84 41.7
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-08 64.7 84 41.7
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.0e-08 64.7 181 31.5
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 2.3e-08 63.5 192 29.2
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.3e-08 63.5 83 43.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 3.0e-08 63.2 175 32.6
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 3.0e-08 63.2 175 32.6
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 3.0e-08 63.2 175 31.4
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.0e-08 62.8 169 32.5
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.0e-08 62.8 198 29.3
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 4.0e-08 62.8 181 30.9
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.2e-08 62.4 84 40.5
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 6.8e-08 62.0 176 33.0
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 8.8e-08 61.6 174 31.6
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 8.8e-08 61.6 182 32.4
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 8.8e-08 61.6 204 30.9
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.2e-07 61.2 171 31.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.5e-07 60.8 83 43.4
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 2.0e-07 60.5 78 43.6
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 3.4e-07 59.7 191 29.8
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 3.4e-07 59.7 78 42.3
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.7e-07 58.9 226 29.2
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.5e-07 58.5 190 26.8
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.3e-06 57.8 174 31.6
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.3e-06 57.8 174 31.6


User provided reference genes

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