Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 0.0e+00 1302.3 689 100.0
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.1e-290 1003.0 698 79.4
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 7.2e-178 628.2 620 54.8
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.8e-173 613.6 613 54.6
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.4e-173 612.1 657 52.4
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.7e-171 607.1 626 52.7
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.2e-171 606.7 676 51.2
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.9e-170 603.6 624 52.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 5.5e-170 602.1 658 50.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.2e-169 600.9 675 50.1
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 3.0e-168 596.3 657 51.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 4.0e-168 595.9 672 50.9
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 4.0e-168 595.9 683 51.2
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.5e-167 594.0 623 51.8
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 7.5e-167 591.7 662 49.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 6.3e-166 588.6 658 50.5
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 8.3e-166 588.2 665 49.9
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.4e-165 585.5 660 50.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.0e-164 583.6 654 49.8
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 7.7e-164 581.6 630 50.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.7e-163 580.5 630 50.5
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 3.8e-163 579.3 617 52.4
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 5.0e-163 578.9 633 50.9
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-162 577.8 626 50.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.5e-162 577.4 658 48.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-162 577.0 626 50.0
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 3.3e-162 576.2 679 47.1
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 3.3e-162 576.2 630 50.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.6e-162 575.5 650 50.3
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 9.5e-162 574.7 623 50.9
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 6.1e-161 572.0 664 50.5
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.4e-160 570.9 626 50.6
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.8e-160 570.5 625 50.9
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.3e-160 570.1 630 49.7
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 2.3e-160 570.1 620 50.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.0e-160 569.7 672 47.9
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.0e-160 569.3 675 48.6
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 5.2e-160 568.9 625 51.2
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 6.8e-160 568.5 626 51.0
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.8e-160 568.5 657 50.5
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 8.9e-160 568.2 650 48.5
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 8.9e-160 568.2 662 49.2
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-159 567.8 625 51.0
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.2e-159 567.8 670 47.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.5e-159 567.4 658 49.8
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 9.8e-159 564.7 664 49.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.3e-158 564.3 687 48.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.7e-158 563.9 661 49.9
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 4.9e-158 562.4 666 47.1
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.9e-158 562.4 620 50.8
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.9e-158 562.4 657 50.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.8e-157 560.5 668 47.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.4e-157 560.1 673 48.0
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 4.1e-157 559.3 619 49.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 5.4e-157 558.9 640 47.7
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 7.0e-157 558.5 695 45.8
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.2e-156 557.8 627 48.5
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.6e-156 557.4 682 46.2
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.0e-156 557.0 680 47.8
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.7e-156 556.6 681 46.4
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 5.9e-156 555.4 667 46.6
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.7e-155 553.9 620 50.8
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 8.6e-155 551.6 675 47.0
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.1e-154 551.2 631 48.2
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.1e-154 551.2 660 47.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.5e-154 550.8 631 48.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.9e-154 550.4 662 47.6
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 3.3e-154 549.7 659 47.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.3e-154 549.7 650 47.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 7.3e-154 548.5 628 48.6
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 9.5e-154 548.1 613 50.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 9.5e-154 548.1 683 45.4
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 2.1e-153 547.0 660 47.6
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-153 546.6 626 48.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 6.2e-153 545.4 626 48.2
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.2e-153 545.4 660 48.0
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.4e-152 544.3 675 45.9
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.3e-152 543.5 660 47.3
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 4.0e-152 542.7 659 47.5
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 5.2e-152 542.3 658 47.1
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 5.2e-152 542.3 626 48.6
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 5.2e-152 542.3 676 46.7
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.9e-150 536.6 658 46.5
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.9e-150 536.6 658 46.5
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 3.7e-150 536.2 629 49.8
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 8.3e-150 535.0 652 47.4
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-149 534.3 646 47.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.9e-149 533.9 631 48.8
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.9e-149 533.9 537 52.7
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.9e-149 533.9 670 46.3
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 3.2e-149 533.1 660 45.2
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 4.6e-148 529.3 646 46.7
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.3e-147 526.9 718 43.3
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.9e-146 523.9 672 45.1
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.3e-146 523.1 587 48.6
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 6.2e-145 518.8 579 52.2
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.0e-143 513.8 660 46.1
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-142 511.1 643 47.0
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 3.2e-141 506.5 547 50.6
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.7e-139 500.7 671 44.3
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.0e-139 500.0 658 45.6
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 3.9e-139 499.6 628 45.9
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.6e-137 494.2 622 44.9
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.0e-136 489.6 536 48.7
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 3.4e-135 486.5 658 41.8
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.5e-132 476.5 531 48.8
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 4.0e-128 463.0 588 47.6
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.7e-126 457.6 650 44.9
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 8.4e-126 455.3 624 39.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.2e-125 453.0 573 45.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 9.3e-125 451.8 655 44.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 7.8e-124 448.7 621 41.5
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.0e-123 446.8 513 46.8
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.8e-121 439.5 620 40.6
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 2.2e-118 430.6 620 39.2
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 8.4e-110 402.1 654 37.9
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.5e-106 390.6 401 51.9
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.4e-93 348.2 431 45.2
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 5.3e-88 329.7 378 49.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-85 321.2 379 46.2
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.5e-79 301.6 181 82.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.6e-60 237.3 244 52.5
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 3.4e-58 230.7 417 37.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.4e-58 230.3 245 50.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.2e-50 205.7 358 38.5
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 4.9e-49 200.3 122 92.6
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-45 188.7 425 32.0
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.3e-45 187.6 216 52.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.4e-42 177.6 235 43.8
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-36 158.7 370 33.0
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 6.2e-36 156.8 211 47.9
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 5.0e-30 137.1 359 32.0
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 8.6e-30 136.3 250 34.8
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-28 131.7 209 41.1
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 4.7e-28 130.6 277 36.5
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 4.4e-26 124.0 265 34.3
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.7e-25 122.1 158 47.5
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.7e-23 114.8 237 32.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.3e-22 111.7 608 23.7
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 3.3e-21 107.8 255 31.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.4e-18 97.4 187 36.9
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.4e-18 97.4 100 50.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.4e-16 92.4 96 53.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.9e-16 92.0 94 47.9
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.0e-15 87.0 130 47.7
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.6e-13 79.7 83 55.4
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-11 75.5 80 53.8
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-11 75.5 83 53.0
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.1e-11 74.7 68 57.4
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.0e-11 74.3 66 59.1
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.2e-11 73.9 84 51.2
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 6.9e-11 73.6 88 48.9
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.2e-10 72.8 72 54.2
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.3e-09 69.3 74 48.6
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 3.8e-09 67.8 60 50.0
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 5.1e-06 57.4 65 46.2
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 5.1e-06 57.4 120 29.2


User provided reference genes

Program Settings